Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_pT_D21
         (383 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    25   3.1  
SPBC2F12.08c |ceg1|pce1|mRNA guanylyltransferase Ceg1|Schizosacc...    25   4.1  
SPCPJ732.01 |vps5||retromer complex subunit Vps5|Schizosaccharom...    24   7.1  
SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces pomb...    24   7.1  
SPBC9B6.11c |||CCR4/nocturin family endoribonuclease|Schizosacch...    24   7.1  
SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces pombe...    24   7.1  
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    24   9.4  

>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
            Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 25.4 bits (53), Expect = 3.1
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -1

Query: 365  MFYTIARLPIDFSSFVILNKYLGLWRCH 282
            + Y  + L I  SSF+  N YL LW  H
Sbjct: 1996 LLYCASFLLIGISSFINENMYLRLWISH 2023


>SPBC2F12.08c |ceg1|pce1|mRNA guanylyltransferase
           Ceg1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 402

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -1

Query: 131 FGVPMTGFFIGKFLDDQETXRMTSFRD 51
           F VP++   +  +LDD+   R   FRD
Sbjct: 303 FNVPLSERIVECYLDDENRWRFLRFRD 329



 Score = 24.2 bits (50), Expect = 7.1
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -1

Query: 137 IWFGVPMTGFFIGKFLDDQETXRMTSF 57
           +W G  M  FF   ++D++E  ++ SF
Sbjct: 277 VWEGRNMYSFFAFMYVDEKEWEKLKSF 303


>SPCPJ732.01 |vps5||retromer complex subunit
           Vps5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 576

 Score = 24.2 bits (50), Expect = 7.1
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -2

Query: 196 VESSTDQSIKWPSSASLLASFGLVFR*QGSS 104
           +ESS+      PS++ LL SF   F   GSS
Sbjct: 327 IESSSSPLRSGPSTSGLLDSFTSAFHTSGSS 357


>SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 387

 Score = 24.2 bits (50), Expect = 7.1
 Identities = 15/57 (26%), Positives = 24/57 (42%)
 Frame = -2

Query: 307 NTSVYGVVTVPASESCEHSLSHHKHYAYFS*LEPHSQVESSTDQSIKWPSSASLLAS 137
           N+S   +    + +S +       H    S L PH+Q+    D  +  PSS S  +S
Sbjct: 134 NSSPASIAKKTSRDSKKRKREDLVHCPACSNLVPHNQINQHLDSCLNSPSSPSSSSS 190


>SPBC9B6.11c |||CCR4/nocturin family
           endoribonuclease|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 502

 Score = 24.2 bits (50), Expect = 7.1
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +1

Query: 151 MPKMAILYFDLLSFPLASVVPVKKNKRNAYG 243
           + K+AI +FD     +A  +PVKK K +A G
Sbjct: 25  LSKLAISFFDQKKNKMADSIPVKK-KGSAKG 54


>SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 697

 Score = 24.2 bits (50), Expect = 7.1
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +1

Query: 196 LASVVPVKKNKRNAYGGKDYAHKIP 270
           L  ++P  ++    YGG + A K+P
Sbjct: 636 LEGIIPALESSHAVYGGMELAKKLP 660


>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
            Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 12/38 (31%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
 Frame = +1

Query: 130  NQMKRGVMPKMAILYFDLL-SFPLASVVPVKKNKRNAY 240
            NQ++R    + ++L+F LL +F    VVP+  +++ +Y
Sbjct: 1759 NQLRRRTFYRYSLLFFALLCTFVAMIVVPLVLDQKLSY 1796


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,740,180
Number of Sequences: 5004
Number of extensions: 35995
Number of successful extensions: 98
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 126307516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)