Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P15_pT_D20
(742 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z46812-1|CAA86843.1| 1405|Caenorhabditis elegans Hypothetical pr... 33 0.28
Z68106-2|CAA92126.2| 402|Caenorhabditis elegans Hypothetical pr... 32 0.49
Z81465-4|CAB03866.3| 613|Caenorhabditis elegans Hypothetical pr... 31 1.1
AL032646-13|CAA21687.3| 613|Caenorhabditis elegans Hypothetical... 31 1.1
U64860-2|AAB04992.3| 373|Caenorhabditis elegans Hypothetical pr... 29 4.6
AF148954-1|AAD37411.1| 4280|Caenorhabditis elegans myotactin for... 28 6.0
AF148953-1|AAD37410.1| 4450|Caenorhabditis elegans myotactin for... 28 6.0
AF040648-6|AAO91708.1| 908|Caenorhabditis elegans Lethal protei... 28 6.0
AF040648-5|AAK21413.1| 4450|Caenorhabditis elegans Lethal protei... 28 6.0
AF040648-4|AAK21414.2| 4280|Caenorhabditis elegans Lethal protei... 28 6.0
U64854-6|AAB18318.2| 5079|Caenorhabditis elegans Uncoordinated p... 28 8.0
U23183-3|AAA64340.3| 496|Caenorhabditis elegans Hypothetical pr... 28 8.0
D45899-1|BAA08309.1| 5071|Caenorhabditis elegans ryanodine recep... 28 8.0
>Z46812-1|CAA86843.1| 1405|Caenorhabditis elegans Hypothetical
protein ZK675.1 protein.
Length = 1405
Score = 32.7 bits (71), Expect = 0.28
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Frame = +2
Query: 341 LLQSIDTKIVSSSTSA-HGSRWRRETRTQSRECERPLC---AIRGVKVGGRASSGSTSL 505
L + +D +V S+SA + RW+RE R + C+ LC RG G R + S SL
Sbjct: 57 LTRFLDQYLVGQSSSADYNDRWKREFRARPSWCDADLCLQQMNRGKATGNRYALYSRSL 115
>Z68106-2|CAA92126.2| 402|Caenorhabditis elegans Hypothetical
protein F41E7.3 protein.
Length = 402
Score = 31.9 bits (69), Expect = 0.49
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = -2
Query: 741 NPILYAFLSDNFKKSFLKACTC 676
NPILYAF+++ F++ F K C
Sbjct: 307 NPILYAFMNETFREEFAKVVPC 328
>Z81465-4|CAB03866.3| 613|Caenorhabditis elegans Hypothetical
protein Y54E2A.1 protein.
Length = 613
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = -2
Query: 741 NPILYAFLSDNFKKSFLKA 685
NPILYAF+S NF+ +F A
Sbjct: 399 NPILYAFISQNFRSTFKTA 417
>AL032646-13|CAA21687.3| 613|Caenorhabditis elegans Hypothetical
protein Y54E2A.1 protein.
Length = 613
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = -2
Query: 741 NPILYAFLSDNFKKSFLKA 685
NPILYAF+S NF+ +F A
Sbjct: 399 NPILYAFISQNFRSTFKTA 417
>U64860-2|AAB04992.3| 373|Caenorhabditis elegans Hypothetical
protein R106.2 protein.
Length = 373
Score = 28.7 bits (61), Expect = 4.6
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = -2
Query: 741 NPILYAFLSDNFKKSFLK 688
NP LY FLSD+F+K+ K
Sbjct: 311 NPFLYVFLSDSFQKNIQK 328
>AF148954-1|AAD37411.1| 4280|Caenorhabditis elegans myotactin form A
protein.
Length = 4280
Score = 28.3 bits (60), Expect = 6.0
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = +2
Query: 254 YTYNVKDANNDSPKDGAQVFQGCRPISIRLLQSID--TKIVSSSTSAHGSRWRRE 412
Y Y V +A+ +P DGA I L Q++D K+ S S + H S+W ++
Sbjct: 472 YEYIVYEASQSAPVDGASYVGAPHVIIKGLKQNVDYTFKVRSRSVNGH-SQWSKD 525
>AF148953-1|AAD37410.1| 4450|Caenorhabditis elegans myotactin form B
protein.
Length = 4450
Score = 28.3 bits (60), Expect = 6.0
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = +2
Query: 254 YTYNVKDANNDSPKDGAQVFQGCRPISIRLLQSID--TKIVSSSTSAHGSRWRRE 412
Y Y V +A+ +P DGA I L Q++D K+ S S + H S+W ++
Sbjct: 472 YEYIVYEASQSAPVDGASYVGAPHVIIKGLKQNVDYTFKVRSRSVNGH-SQWSKD 525
>AF040648-6|AAO91708.1| 908|Caenorhabditis elegans Lethal protein
805, isoform d protein.
Length = 908
Score = 28.3 bits (60), Expect = 6.0
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = +2
Query: 254 YTYNVKDANNDSPKDGAQVFQGCRPISIRLLQSID--TKIVSSSTSAHGSRWRRE 412
Y Y V +A+ +P DGA I L Q++D K+ S S + H S+W ++
Sbjct: 472 YEYIVYEASQSAPVDGASYVGAPHVIIKGLKQNVDYTFKVRSRSVNGH-SQWSKD 525
>AF040648-5|AAK21413.1| 4450|Caenorhabditis elegans Lethal protein
805, isoform b protein.
Length = 4450
Score = 28.3 bits (60), Expect = 6.0
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = +2
Query: 254 YTYNVKDANNDSPKDGAQVFQGCRPISIRLLQSID--TKIVSSSTSAHGSRWRRE 412
Y Y V +A+ +P DGA I L Q++D K+ S S + H S+W ++
Sbjct: 472 YEYIVYEASQSAPVDGASYVGAPHVIIKGLKQNVDYTFKVRSRSVNGH-SQWSKD 525
>AF040648-4|AAK21414.2| 4280|Caenorhabditis elegans Lethal protein
805, isoform a protein.
Length = 4280
Score = 28.3 bits (60), Expect = 6.0
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = +2
Query: 254 YTYNVKDANNDSPKDGAQVFQGCRPISIRLLQSID--TKIVSSSTSAHGSRWRRE 412
Y Y V +A+ +P DGA I L Q++D K+ S S + H S+W ++
Sbjct: 472 YEYIVYEASQSAPVDGASYVGAPHVIIKGLKQNVDYTFKVRSRSVNGH-SQWSKD 525
>U64854-6|AAB18318.2| 5079|Caenorhabditis elegans Uncoordinated
protein 68 protein.
Length = 5079
Score = 27.9 bits (59), Expect = 8.0
Identities = 12/28 (42%), Positives = 20/28 (71%)
Frame = +1
Query: 643 VQSGVHVLSGGTSARFQKTLLEIIRQKR 726
+Q G+H+LSGG + QK L+E ++ K+
Sbjct: 3920 LQLGIHLLSGG-NVEIQKMLIEYLQLKK 3946
>U23183-3|AAA64340.3| 496|Caenorhabditis elegans Hypothetical
protein K01A12.3 protein.
Length = 496
Score = 27.9 bits (59), Expect = 8.0
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = -2
Query: 741 NPILYAFLSDNFKKSFLKACTCAA 670
NP +YA+ +D + ++ + TCAA
Sbjct: 333 NPFIYAYFNDRMRLTYKEILTCAA 356
>D45899-1|BAA08309.1| 5071|Caenorhabditis elegans ryanodine receptor
protein.
Length = 5071
Score = 27.9 bits (59), Expect = 8.0
Identities = 12/28 (42%), Positives = 20/28 (71%)
Frame = +1
Query: 643 VQSGVHVLSGGTSARFQKTLLEIIRQKR 726
+Q G+H+LSGG + QK L+E ++ K+
Sbjct: 3917 LQLGIHLLSGG-NVEIQKMLIEYLQLKK 3943
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,363,019
Number of Sequences: 27780
Number of extensions: 185162
Number of successful extensions: 541
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 541
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1745954468
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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