Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_pT_D19
         (701 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64840-4|AAB04962.1|  316|Caenorhabditis elegans Serpentine rece...    29   3.2  
AF078157-18|AAG24080.1|  338|Caenorhabditis elegans Seven tm rec...    28   5.6  
AF016447-2|AAG24012.1|  339|Caenorhabditis elegans Hypothetical ...    28   5.6  
Z81463-8|CAB03849.2|  346|Caenorhabditis elegans Hypothetical pr...    28   7.4  

>U64840-4|AAB04962.1|  316|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 68 protein.
          Length = 316

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 10/28 (35%), Positives = 21/28 (75%)
 Frame = -1

Query: 161 IMCAINASILMFKTNLSTIIMNYICIFF 78
           ++ AIN ++++F ++L T+ + YI +FF
Sbjct: 262 VIIAINQTLMVFSSDLMTLSLPYILLFF 289


>AF078157-18|AAG24080.1|  338|Caenorhabditis elegans Seven tm
           receptor protein 28 protein.
          Length = 338

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -3

Query: 432 IYKKTAKCICYHSPTCVIYLFRMF 361
           IY+  A CIC+H P+   Y+   F
Sbjct: 250 IYQLAAPCICFHIPSFFFYIAPFF 273


>AF016447-2|AAG24012.1|  339|Caenorhabditis elegans Hypothetical
           protein C54F6.9 protein.
          Length = 339

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 18/46 (39%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
 Frame = -2

Query: 472 IAKLNLIEMSLFLDL*ENSEMHLLSLSYMCYLFIQNVLCS--RNFK 341
           +A  N+IE     D  EN E     L + C  F  NVLC   R FK
Sbjct: 150 LAVFNVIEYFSTFDFIENLEYSDKKLLFQCNTFNANVLCGAMRGFK 195


>Z81463-8|CAB03849.2|  346|Caenorhabditis elegans Hypothetical
           protein C06B8.6 protein.
          Length = 346

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = -1

Query: 164 FIMCAINASILMFKTNLSTIIMNYICIFFQLWCCF 60
           F +C  +  +++FKT  S   + +  + F  W CF
Sbjct: 37  FPLCIFSGWVIVFKTPPSMSSVKFSLLTFHFWTCF 71


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,850,945
Number of Sequences: 27780
Number of extensions: 257630
Number of successful extensions: 583
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 583
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)