Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_pT_D14
         (839 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1450.04 |tef5||translation elongation factor EF-1 beta subun...   156   4e-39
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc...    26   5.8  
SPBC776.06c |||spindle pole body interacting protein |Schizosacc...    26   7.6  

>SPCC1450.04 |tef5||translation elongation factor EF-1 beta subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 214

 Score =  156 bits (378), Expect = 4e-39
 Identities = 86/201 (42%), Positives = 111/201 (55%), Gaps = 1/201 (0%)
 Frame = -3

Query: 711 MAVGDVKTAQGLNDLNQYLAEKXYVSGYTPSQADVQVFEQVGKAP-AANLPHVLRWYNQI 535
           M   D+ +  GL  LN +L +K ++ GY PSQAD  VF+ VG AP  A  P+  RWY QI
Sbjct: 1   MGFSDLTSDAGLKQLNDFLLDKSFIEGYEPSQADAVVFKAVGVAPDTAKYPNGARWYKQI 60

Query: 534 ASYTSAERKTWSQGTSPLXXXXXXXXXXXXXXXXXXXDVDLFGSGXXXXXXXXXXXXXXR 355
           A+Y  A        T P                    ++DLFGS                
Sbjct: 61  ATYDLA--------TLPGTAKEVSAYGPEGAAAAEEDEIDLFGSDEEEDPEAERIKAERV 112

Query: 354 LKAYADKKSKKPALIAKSSILLDVKPWDDETDMKEMENQVRTIEMEGLLWGASKLVPVGY 175
            + Y  KK+ KP  + KS + LDVKPWDDET M E+E  VR+I+M+GL+WG SKLVPVG+
Sbjct: 113 AE-YNKKKAAKPKAVHKSLVTLDVKPWDDETPMDELEKAVRSIQMDGLVWGLSKLVPVGF 171

Query: 174 GINKLQIMCVIEDDKVSVDLL 112
           G+NK QI  V+EDDKVS++ L
Sbjct: 172 GVNKFQINLVVEDDKVSLEAL 192



 Score = 31.1 bits (67), Expect = 0.20
 Identities = 12/21 (57%), Positives = 18/21 (85%)
 Frame = -1

Query: 107 EKIQEFEDFVQSVDIAAFNKI 45
           E+++ FED+VQS DIAA +K+
Sbjct: 194 EELEGFEDYVQSTDIAAMSKL 214


>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1016

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
 Frame = +1

Query: 193 FGGSPEKAFHFNSAYLVFHFLHIGFIIP-WLDIKENR 300
           FG S     HF+  Y VF    IG I P W++   N+
Sbjct: 485 FGNSYYNDHHFHYGYFVFTAAVIGHIDPDWINTGNNK 521


>SPBC776.06c |||spindle pole body interacting protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +3

Query: 27  TCYGCLDFVKCSNVNRLYKIFKFLNFFWS 113
           T Y  L F++ S +N  YK +KF  F WS
Sbjct: 440 TSYEAL-FLESSPLNPYYKDYKFKGFGWS 467


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,109,907
Number of Sequences: 5004
Number of extensions: 60177
Number of successful extensions: 160
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)