Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P15_pT_D14
(839 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_04_0016 + 16461542-16461566,16462701-16462732,16463015-164631... 143 1e-34
07_03_1580 + 27888275-27888360,27888755-27888871,27888964-278890... 142 3e-34
07_03_1260 - 25260872-25261101,25261199-25261312,25261473-252615... 132 3e-31
01_06_1167 - 35062766-35062870,35063165-35063228,35063647-350637... 34 0.12
11_01_0574 + 4582098-4582331,4582450-4582492,4582683-4582757,458... 31 0.86
03_02_0764 + 10990220-10992410,10992809-10993616,10994734-109949... 28 8.1
>03_04_0016 +
16461542-16461566,16462701-16462732,16463015-16463100,
16463189-16463305,16463399-16463474,16463695-16463818,
16464482-16464595,16464700-16464947
Length = 273
Score = 143 bits (347), Expect = 1e-34
Identities = 87/205 (42%), Positives = 112/205 (54%), Gaps = 5/205 (2%)
Frame = -3
Query: 711 MAVGDVKTAQGLNDLNQYLAEKXYVSGYTPSQADVQVFEQVGKAPAANLPHVLRWYNQIA 532
+ + +V + GL L++YL + Y+SGY S+ D+ VF + APAA+ +V RWY+ I+
Sbjct: 22 ITLSNVNSEAGLQKLDEYLLTRSYISGYQASKDDMTVFTSLPSAPAASYVNVTRWYDHIS 81
Query: 531 -----SYTSAERKTWSQGTSPLXXXXXXXXXXXXXXXXXXXDVDLFGSGXXXXXXXXXXX 367
S +AE + ++ DVDLFG
Sbjct: 82 ALLRSSGVTAEGEGVKVESTACSVSPTADQKAPAADEEDDDDVDLFGEETEEEKKAAEE- 140
Query: 366 XXXRLKAYADKKSKKPALIAKSSILLDVKPWDDETDMKEMENQVRTIEMEGLLWGASKLV 187
+A A K S K KSS+LLDVKPWDDETDM ++E VR ++MEGLLWGASKLV
Sbjct: 141 -----RAAAVKASGKKKESGKSSVLLDVKPWDDETDMAKLEEAVRNVKMEGLLWGASKLV 195
Query: 186 PVGYGINKLQIMCVIEDDKVSVDLL 112
PVGYGI KLQIM I DD VSVD L
Sbjct: 196 PVGYGIKKLQIMMTIVDDLVSVDSL 220
>07_03_1580 +
27888275-27888360,27888755-27888871,27888964-27889045,
27889710-27889821,27889958-27890071,27890163-27890326
Length = 224
Score = 142 bits (344), Expect = 3e-34
Identities = 85/204 (41%), Positives = 109/204 (53%), Gaps = 4/204 (1%)
Frame = -3
Query: 699 DVKTAQGLNDLNQYLAEKXYVSGYTPSQADVQVFEQVGKAPAANLPHVLRWYNQIASYTS 520
D+ TA GL L Q+L+ K YVSG S+ D++VF V P A P+ RWY+ +A+ +
Sbjct: 7 DLHTADGLKALEQHLSGKTYVSGNAISKDDIKVFAAVPSKPGAEFPNAARWYDTVAAALA 66
Query: 519 AERKTWSQGTS----PLXXXXXXXXXXXXXXXXXXXDVDLFGSGXXXXXXXXXXXXXXRL 352
+ + G + D+DLFG
Sbjct: 67 SRFPGKAVGVNLPGGGAASSAAAAAPAAKDADEDDDDLDLFGDETEEDKKAAD------- 119
Query: 351 KAYADKKSKKPALIAKSSILLDVKPWDDETDMKEMENQVRTIEMEGLLWGASKLVPVGYG 172
+ A K S K KSS+LLDVKPWDDETDMK++E VR+++MEGL WGASKLVPVGYG
Sbjct: 120 ERAASKASSKKKESGKSSVLLDVKPWDDETDMKKLEEAVRSVQMEGLTWGASKLVPVGYG 179
Query: 171 INKLQIMCVIEDDKVSVDLLTRKN 100
I KLQIM I DD VSVD L ++
Sbjct: 180 IKKLQIMLTIVDDLVSVDSLIEEH 203
>07_03_1260 -
25260872-25261101,25261199-25261312,25261473-25261596,
25261755-25261839,25261917-25262033,25262122-25262207
Length = 251
Score = 132 bits (320), Expect = 3e-31
Identities = 84/204 (41%), Positives = 105/204 (51%), Gaps = 8/204 (3%)
Frame = -3
Query: 699 DVKTAQGLNDLNQYLAEKXYVSGYTPSQADVQVFEQVGKAPAANLPHVLRWYNQI----- 535
+V + GL L++YL + Y+SGY S D+ V+ AP+++ +V RW+ I
Sbjct: 7 NVSSEAGLKKLDEYLLTRSYISGYQASNDDLAVYSAFSTAPSSSYTNVARWFTHIDALLR 66
Query: 534 ASYTSAER---KTWSQGTSPLXXXXXXXXXXXXXXXXXXXDVDLFGSGXXXXXXXXXXXX 364
S +A+ K S DVDLFG
Sbjct: 67 LSGVTADGQGVKVESTAVPSASTPDVADAKAPAADDDDDDDVDLFGEETEEEKKAAEE-- 124
Query: 363 XXRLKAYADKKSKKPALIAKSSILLDVKPWDDETDMKEMENQVRTIEMEGLLWGASKLVP 184
+A A K S K KSS+LLDVKPWDDETDM ++E VR ++MEGLLWGASKLVP
Sbjct: 125 ----RAAAVKASGKKKESGKSSVLLDVKPWDDETDMTKLEEAVRNVKMEGLLWGASKLVP 180
Query: 183 VGYGINKLQIMCVIEDDKVSVDLL 112
VGYGI KLQIM I DD VSVD L
Sbjct: 181 VGYGIKKLQIMMTIVDDLVSVDSL 204
>01_06_1167 -
35062766-35062870,35063165-35063228,35063647-35063738,
35064137-35064205,35064322-35064412,35064509-35064732,
35065064-35065180,35065583-35065651,35066172-35066237,
35066335-35066505,35066581-35066661,35067620-35067700
Length = 409
Score = 34.3 bits (75), Expect = 0.12
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 9/57 (15%)
Frame = -3
Query: 678 LNDLNQYLAEKXYV--SGYTPSQADVQVFEQV-------GKAPAANLPHVLRWYNQI 535
L +LNQ L++K + +G+ PS AD+ VF + G+ PHVLRW + I
Sbjct: 76 LGNLNQDLSQKSVLLGNGFKPSVADIVVFATIQVFVSHLGENELQKYPHVLRWMDYI 132
>11_01_0574 +
4582098-4582331,4582450-4582492,4582683-4582757,
4584344-4584465,4584547-4584654,4585975-4586119,
4586786-4586869,4586997-4587345,4587527-4587666,
4587784-4588037,4588409-4588576,4588686-4588976,
4589329-4589538,4589778-4589860,4590288-4590414,
4593624-4595516,4596274-4596395,4596487-4596628,
4596719-4596940,4597489-4597563,4598351-4598452,
4598616-4598819
Length = 1730
Score = 31.5 bits (68), Expect = 0.86
Identities = 21/67 (31%), Positives = 27/67 (40%)
Frame = +2
Query: 41 FRFCXXXXXXXXXXXXXILEFFLVSKSTETLSSSMTHIICSLFMPYPTGTSLEAPQRRPS 220
FRFC L F L SK TE + +TH+IC + +G EA R
Sbjct: 602 FRFCVSQYEEKDRLLLKNLCFILGSKFTEKATKKVTHLICK----FASGPKYEAYYSRGI 657
Query: 221 ISIVRTW 241
+I W
Sbjct: 658 PTITAEW 664
>03_02_0764 +
10990220-10992410,10992809-10993616,10994734-10994968,
10995028-10995169,10997365-10997444,10997636-10997776
Length = 1198
Score = 28.3 bits (60), Expect = 8.1
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +1
Query: 46 ILLNAAMSTDCTKSSNS*IFSGQQINRNFVVLDDTHNLQFIY 171
+++NA S D TK+ F GQ + VV+D N+Q Y
Sbjct: 755 VIVNACSSRDYTKNIVGVCFVGQDVTGQKVVMDKFINIQGDY 796
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,604,802
Number of Sequences: 37544
Number of extensions: 410782
Number of successful extensions: 983
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 952
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 983
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2326952232
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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