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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_pT_D13
         (771 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...   110   1e-26
L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    59   4e-11
L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    57   2e-10
AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    39   4e-05
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    38   1e-04
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    38   1e-04
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    37   2e-04
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      37   2e-04
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    24   1.8  
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    23   4.2  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   4.2  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    22   5.5  
DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              22   7.3  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   7.3  
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    21   9.6  

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score =  110 bits (265), Expect = 1e-26
 Identities = 56/190 (29%), Positives = 84/190 (44%), Gaps = 2/190 (1%)
 Frame = -1

Query: 747 ERKIFNCEVCNMKFXXXXXXXXXXXXXHDKIK-AYVCDLCGYACGTNGELRQHRAIHSDD 571
           E K + C +C   F               + +  Y C++CG        L +H   H+ +
Sbjct: 58  EEKTYQCLLCQKAFDQKNLYQSHLRSHGKEGEDPYRCNICGKTFAVPARLTRHYRTHTGE 117

Query: 570 KPFVCDKCDKTFKTYSNLKTHMDIH-EDTSYECFICRRVLNSRRTLRKHLLVHEDKCRHV 394
           KP+ C+ C K+F    NL  H  IH ++  Y+C +C R       L +H+ +H  +  H 
Sbjct: 118 KPYQCEYCSKSFSVKENLSVHRRIHTKERPYKCDVCERAFEHSGKLHRHMRIHTGERPHK 177

Query: 393 CSYCNKAFKRRQTLKVHMYTHTGVKPLTCKLCDERFAYASTLRSHRMRCHPELMVPDGRA 214
           C+ C+K F +   L +HM THTG KP  CK C + F  +  L+ H  R H          
Sbjct: 178 CTVCSKTFIQSGQLVIHMRTHTGEKPYVCKACGKGFTCSKQLKVH-TRTHTGEKPYTCDI 236

Query: 213 AYPAANYNHV 184
              +  YNHV
Sbjct: 237 CGKSFGYNHV 246



 Score =  107 bits (256), Expect = 1e-25
 Identities = 50/167 (29%), Positives = 77/167 (46%), Gaps = 1/167 (0%)
 Frame = -1

Query: 735 FNCEVCNMKFXXXXXXXXXXXXXHDKIKAYVCDLCGYACGTNGELRQHRAIHSDDKPFVC 556
           + C +C   F               + K Y C+ C  +      L  HR IH+ ++P+ C
Sbjct: 92  YRCNICGKTFAVPARLTRHYRTHTGE-KPYQCEYCSKSFSVKENLSVHRRIHTKERPYKC 150

Query: 555 DKCDKTFKTYSNLKTHMDIHE-DTSYECFICRRVLNSRRTLRKHLLVHEDKCRHVCSYCN 379
           D C++ F+    L  HM IH  +  ++C +C +       L  H+  H  +  +VC  C 
Sbjct: 151 DVCERAFEHSGKLHRHMRIHTGERPHKCTVCSKTFIQSGQLVIHMRTHTGEKPYVCKACG 210

Query: 378 KAFKRRQTLKVHMYTHTGVKPLTCKLCDERFAYASTLRSHRMRCHPE 238
           K F   + LKVH  THTG KP TC +C + F Y   L+ H++  + E
Sbjct: 211 KGFTCSKQLKVHTRTHTGEKPYTCDICGKSFGYNHVLKLHQVAHYGE 257



 Score = 95.9 bits (228), Expect = 4e-22
 Identities = 51/172 (29%), Positives = 73/172 (42%), Gaps = 1/172 (0%)
 Frame = -1

Query: 741 KIFNCEVCNMKFXXXXXXXXXXXXXHDKIKAYVCDLCGYACGTNGELRQHRAIHSDDKPF 562
           K + CE C+  F               K + Y CD+C  A   +G+L +H  IH+ ++P 
Sbjct: 118 KPYQCEYCSKSFSVKENLSVHRRIHT-KERPYKCDVCERAFEHSGKLHRHMRIHTGERPH 176

Query: 561 VCDKCDKTFKTYSNLKTHMDIHE-DTSYECFICRRVLNSRRTLRKHLLVHEDKCRHVCSY 385
            C  C KTF     L  HM  H  +  Y C  C +     + L+ H   H  +  + C  
Sbjct: 177 KCTVCSKTFIQSGQLVIHMRTHTGEKPYVCKACGKGFTCSKQLKVHTRTHTGEKPYTCDI 236

Query: 384 CNKAFKRRQTLKVHMYTHTGVKPLTCKLCDERFAYASTLRSHRMRCHPELMV 229
           C K+F     LK+H   H G K   C LC E F    T+  H ++ H +  V
Sbjct: 237 CGKSFGYNHVLKLHQVAHYGEKVYKCTLCHETFGSKKTMELH-IKTHSDSSV 287


>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
           protein.
          Length = 81

 Score = 59.3 bits (137), Expect = 4e-11
 Identities = 27/68 (39%), Positives = 37/68 (54%)
 Frame = -1

Query: 486 SYECFICRRVLNSRRTLRKHLLVHEDKCRHVCSYCNKAFKRRQTLKVHMYTHTGVKPLTC 307
           S+ C  C +V  S   L+ H+  H   C+  C  C KAF R   L+ H+ THTG KP +C
Sbjct: 16  SFSCKYCEKVYVSLGALKMHIRTHTLPCK--CHLCGKAFSRPWLLQGHIRTHTGEKPFSC 73

Query: 306 KLCDERFA 283
           + C+  FA
Sbjct: 74  QHCNRAFA 81



 Score = 43.2 bits (97), Expect = 3e-06
 Identities = 19/67 (28%), Positives = 32/67 (47%)
 Frame = -1

Query: 570 KPFVCDKCDKTFKTYSNLKTHMDIHEDTSYECFICRRVLNSRRTLRKHLLVHEDKCRHVC 391
           K F C  C+K + +   LK H+  H     +C +C +  +    L+ H+  H  +    C
Sbjct: 15  KSFSCKYCEKVYVSLGALKMHIRTH-TLPCKCHLCGKAFSRPWLLQGHIRTHTGEKPFSC 73

Query: 390 SYCNKAF 370
            +CN+AF
Sbjct: 74  QHCNRAF 80



 Score = 36.7 bits (81), Expect = 2e-04
 Identities = 20/72 (27%), Positives = 29/72 (40%)
 Frame = -1

Query: 750 QERKIFNCEVCNMKFXXXXXXXXXXXXXHDKIKAYVCDLCGYACGTNGELRQHRAIHSDD 571
           Q +K F+C+ C   +                 K   C LCG A      L+ H   H+ +
Sbjct: 12  QAKKSFSCKYCEKVYVSLGALKMHIRTHTLPCK---CHLCGKAFSRPWLLQGHIRTHTGE 68

Query: 570 KPFVCDKCDKTF 535
           KPF C  C++ F
Sbjct: 69  KPFSCQHCNRAF 80


>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 56.8 bits (131), Expect = 2e-10
 Identities = 26/68 (38%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
 Frame = -1

Query: 582 HSDDKPFVCDKCDKTFKTYSNLKTHMDIHE-DTSYECFICRRVLNSRRTLRKHLLVHEDK 406
           H+ +KPF C +C K F    +LKTHM +H  +  Y C  C R       LR+HL VH  +
Sbjct: 4   HTGEKPFECPECHKRFTRDHHLKTHMRLHTGEKPYHCSHCDRQFVQVANLRRHLRVHTGE 63

Query: 405 CRHVCSYC 382
             + C  C
Sbjct: 64  RPYACELC 71



 Score = 51.6 bits (118), Expect = 8e-09
 Identities = 23/50 (46%), Positives = 27/50 (54%)
 Frame = -1

Query: 393 CSYCNKAFKRRQTLKVHMYTHTGVKPLTCKLCDERFAYASTLRSHRMRCH 244
           C  C+K F R   LK HM  HTG KP  C  CD +F   + LR H +R H
Sbjct: 12  CPECHKRFTRDHHLKTHMRLHTGEKPYHCSHCDRQFVQVANLRRH-LRVH 60



 Score = 50.0 bits (114), Expect = 2e-08
 Identities = 19/62 (30%), Positives = 34/62 (54%)
 Frame = -1

Query: 483 YECFICRRVLNSRRTLRKHLLVHEDKCRHVCSYCNKAFKRRQTLKVHMYTHTGVKPLTCK 304
           +EC  C +       L+ H+ +H  +  + CS+C++ F +   L+ H+  HTG +P  C+
Sbjct: 10  FECPECHKRFTRDHHLKTHMRLHTGEKPYHCSHCDRQFVQVANLRRHLRVHTGERPYACE 69

Query: 303 LC 298
           LC
Sbjct: 70  LC 71



 Score = 48.8 bits (111), Expect = 6e-08
 Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
 Frame = -1

Query: 654 KAYVCDLCGYACGTNGELRQHRAIHSDDKPFVCDKCDKTFKTYSNLKTHMDIHE-DTSYE 478
           K + C  C      +  L+ H  +H+ +KP+ C  CD+ F   +NL+ H+ +H  +  Y 
Sbjct: 8   KPFECPECHKRFTRDHHLKTHMRLHTGEKPYHCSHCDRQFVQVANLRRHLRVHTGERPYA 67

Query: 477 CFIC 466
           C +C
Sbjct: 68  CELC 71



 Score = 33.1 bits (72), Expect = 0.003
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = -1

Query: 336 THTGVKPLTCKLCDERFAYASTLRSHRMRCH 244
           THTG KP  C  C +RF     L++H MR H
Sbjct: 3   THTGEKPFECPECHKRFTRDHHLKTH-MRLH 32


>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
           finger domain-Z2 isoform protein.
          Length = 71

 Score = 39.1 bits (87), Expect = 4e-05
 Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
 Frame = -1

Query: 579 SDDKPFVCDKCDKTFKTYSNLKTHM-DIHEDTS--YECFICRRVLNSRRTLRKHLLVH 415
           S  K F C  C K   + ++LK H+ D H +    Y C IC RV  SR +L  H+  +
Sbjct: 1   SAKKLFTCQLCGKVLCSKASLKRHVADKHAERQEEYRCVICERVYCSRNSLMTHIYTY 58



 Score = 30.7 bits (66), Expect = 0.016
 Identities = 14/52 (26%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
 Frame = -1

Query: 654 KAYVCDLCGYACGTNGELRQHRA-IHSD-DKPFVCDKCDKTFKTYSNLKTHM 505
           K + C LCG    +   L++H A  H++  + + C  C++ + + ++L TH+
Sbjct: 4   KLFTCQLCGKVLCSKASLKRHVADKHAERQEEYRCVICERVYCSRNSLMTHI 55


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 37.9 bits (84), Expect = 1e-04
 Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
 Frame = -1

Query: 603 LRQHRAIHSDDKPFVCDKCDKTFKTYSNLKTHMDIHEDT-SYECFICRRVLNSRRTLRKH 427
           L  H   H   KPF C+KC  +    S L +H+  H +   Y C  C        +L+ H
Sbjct: 4   LEYHLRNHFGSKPFKCEKCSYSCVNKSMLNSHLKSHSNVYQYRCANCTYATKYCHSLKLH 63

Query: 426 L 424
           L
Sbjct: 64  L 64



 Score = 35.9 bits (79), Expect = 4e-04
 Identities = 15/50 (30%), Positives = 22/50 (44%)
 Frame = -1

Query: 654 KAYVCDLCGYACGTNGELRQHRAIHSDDKPFVCDKCDKTFKTYSNLKTHM 505
           K + C+ C Y+C     L  H   HS+   + C  C    K   +LK H+
Sbjct: 15  KPFKCEKCSYSCVNKSMLNSHLKSHSNVYQYRCANCTYATKYCHSLKLHL 64



 Score = 31.9 bits (69), Expect = 0.007
 Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
 Frame = -1

Query: 522 NLKTHMDIHEDTS-YECFICRRVLNSRRTLRKHLLVHEDKCRHVCSYCNKAFKRRQTLKV 346
           +L+ H+  H  +  ++C  C     ++  L  HL  H +  ++ C+ C  A K   +LK+
Sbjct: 3   HLEYHLRNHFGSKPFKCEKCSYSCVNKSMLNSHLKSHSNVYQYRCANCTYATKYCHSLKL 62

Query: 345 HM--YTH 331
           H+  Y+H
Sbjct: 63  HLRKYSH 69



 Score = 28.7 bits (61), Expect = 0.063
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = -1

Query: 354 LKVHMYTHTGVKPLTCKLCDERFAYASTLRSH 259
           L+ H+  H G KP  C+ C       S L SH
Sbjct: 4   LEYHLRNHFGSKPFKCEKCSYSCVNKSMLNSH 35


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 37.5 bits (83), Expect = 1e-04
 Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
 Frame = -1

Query: 564 FVCDKCDKTFKTYSNLKTHM-DIHEDTSYE--CFICRRVLNSRRTLRKHLLVH 415
           F C+ C+K   + + L+ H+ ++H   S E  C IC+RV +S  +LR H  ++
Sbjct: 3   FRCEPCNKILTSLTRLRRHIQNVHTRPSKEPICNICKRVYSSLNSLRNHKSIY 55



 Score = 22.6 bits (46), Expect = 4.2
 Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 1/53 (1%)
 Frame = -1

Query: 735 FNCEVCNMKFXXXXXXXXXXXXXHDK-IKAYVCDLCGYACGTNGELRQHRAIH 580
           F CE CN                H +  K  +C++C     +   LR H++I+
Sbjct: 3   FRCEPCNKILTSLTRLRRHIQNVHTRPSKEPICNICKRVYSSLNSLRNHKSIY 55


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 37.1 bits (82), Expect = 2e-04
 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
 Frame = -1

Query: 573 DKPFVCDKCDKTFKTYSNLKTH-MDIHE--DTSYECFICRRVLNSRRTLRKH 427
           ++P  C  C + F  Y +LK H  D HE  DT Y C  C R   ++ +L  H
Sbjct: 3   NEPQECPYCRRNFSCYYSLKRHFQDKHEQSDTLYVCEFCNRRYRTKNSLTTH 54



 Score = 33.9 bits (74), Expect = 0.002
 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
 Frame = -1

Query: 480 ECFICRRVLNSRRTLRKHLL-VHEDK-CRHVCSYCNKAFKRRQTLKVH 343
           EC  CRR  +   +L++H    HE     +VC +CN+ ++ + +L  H
Sbjct: 7   ECPYCRRNFSCYYSLKRHFQDKHEQSDTLYVCEFCNRRYRTKNSLTTH 54



 Score = 26.6 bits (56), Expect = 0.26
 Identities = 10/31 (32%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = -1

Query: 573 DKPFVCDKCDKTFKTYSNLKTHMDI-HEDTS 484
           D  +VC+ C++ ++T ++L TH  + H  +S
Sbjct: 33  DTLYVCEFCNRRYRTKNSLTTHKSLQHRGSS 63


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 37.1 bits (82), Expect = 2e-04
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
 Frame = -1

Query: 648 YVCDLCGYACGTNGELRQHRAIHSDDKPF---VCDKCDKTFKTYSNLKTHMDIH 496
           Y CD+CG    T   L++H+      +P    VC  C K F+T ++L  H  I+
Sbjct: 372 YTCDVCGKTLSTKLTLKRHKE-QQHFQPLNSAVCALCHKVFRTLNSLNNHKSIY 424



 Score = 31.9 bits (69), Expect = 0.007
 Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 3/53 (5%)
 Frame = -1

Query: 564 FVCDKCDKTFKTYSNLKTHMD---IHEDTSYECFICRRVLNSRRTLRKHLLVH 415
           + CD C KT  T   LK H +        S  C +C +V  +  +L  H  ++
Sbjct: 372 YTCDVCGKTLSTKLTLKRHKEQQHFQPLNSAVCALCHKVFRTLNSLNNHKSIY 424



 Score = 31.5 bits (68), Expect = 0.009
 Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
 Frame = -1

Query: 483 YECFICRRVLNSRRTLRKHLLVHEDKCRH--VCSYCNKAFKRRQTLKVH 343
           Y C +C + L+++ TL++H      +  +  VC+ C+K F+   +L  H
Sbjct: 372 YTCDVCGKTLSTKLTLKRHKEQQHFQPLNSAVCALCHKVFRTLNSLNNH 420


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
            protein.
          Length = 1143

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -1

Query: 426  LLVHEDKCRHVCSYCNKAFKRRQTLKVHMYTH 331
            +LV+E    +VC  C  A    QTLK  + TH
Sbjct: 1061 MLVYEGGHFYVCGDCTMAEDVYQTLKHIIQTH 1092


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 8/25 (32%), Positives = 12/25 (48%)
 Frame = +3

Query: 540 FYRIYRTRTACRRCVWRDVAAAPRW 614
           F+ +Y  R  CR C+   V +   W
Sbjct: 25  FFTMYLVRAFCRNCIHPTVFSVLFW 49


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 8/25 (32%), Positives = 12/25 (48%)
 Frame = +3

Query: 540 FYRIYRTRTACRRCVWRDVAAAPRW 614
           F+ +Y  R  CR C+   V +   W
Sbjct: 473 FFTMYLVRAFCRNCIHPTVFSVLFW 497



 Score = 21.4 bits (43), Expect = 9.6
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
 Frame = -1

Query: 552 KCDKTFKTYSNLKTHMDI---HEDTSYECFICRRVLNSRRTLRKH 427
           KC +T   YSN +TH  +      T  +     RV ++RR  R++
Sbjct: 364 KCSQTSVHYSNGQTHSQLCPTPRSTHLKVSGINRVGSTRRPSRRN 408


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 526 IRFESFIAFIAHERLVVAVY 585
           I F SF+ FI   ++ VAVY
Sbjct: 82  ITFASFLLFILLVQIAVAVY 101


>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 10/24 (41%), Positives = 10/24 (41%)
 Frame = -1

Query: 480 ECFICRRVLNSRRTLRKHLLVHED 409
           EC  CR         RKHLL   D
Sbjct: 39  ECVFCRNNGEEEAYYRKHLLKDAD 62


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 10/26 (38%), Positives = 11/26 (42%)
 Frame = +3

Query: 432 CVASGDCSARVDK*NIRTTCPRGCPC 509
           C A   C    D  +   TCP GC C
Sbjct: 743 CFALCHC-CDFDACDCEMTCPAGCKC 767


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -1

Query: 558 CDKCDKTFKTYSNLKTH 508
           C+K +K  +TY  +K H
Sbjct: 163 CEKYEKNGETYLRIKKH 179


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 208,640
Number of Sequences: 438
Number of extensions: 4675
Number of successful extensions: 59
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24154023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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