Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_pT_D12
         (680 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomy...    42   1e-04
SPBC16H5.09c |||alpha-1,2-mannosyltransferase |Schizosaccharomyc...    29   0.82 
SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr...    27   2.5  
SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   2.5  
SPAC607.05 |rpn9||19S proteasome regulatory subunit Rpn9|Schizos...    27   3.3  
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch...    26   5.8  

>SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 541

 Score = 41.5 bits (93), Expect = 1e-04
 Identities = 21/86 (24%), Positives = 45/86 (52%), Gaps = 3/86 (3%)
 Frame = -2

Query: 679 RMYPSVPLIXRLITKDAEVG-GLKLSKGTSVVLNIFQMHRNPEVFEKPLEFIPERF--DS 509
           R+ P V ++   + K   +     + K   V+  ++    + +V+ +P  F P+R+  + 
Sbjct: 381 RLRPPVLMVPYRVKKAFPITPDYTVPKDAMVIPTLYGALHDSKVYPEPETFNPDRWAPNG 440

Query: 508 LEHKNPFSWLAFSAGPRNCIGQKFAM 431
           L  ++P +W+ F  GP  C+GQ++A+
Sbjct: 441 LAEQSPKNWMVFGNGPHVCLGQRYAV 466


>SPBC16H5.09c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 372

 Score = 28.7 bits (61), Expect = 0.82
 Identities = 19/75 (25%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
 Frame = -2

Query: 679 RMYPSVPLIXRLITKDAEVGGLKLSKGTSVVLNIFQMHRN-PEVFEKPLEFIPERFDSLE 503
           R+ PS  L+   + KD       L+K    V+ +F++ +  P ++   LEFI +  ++L 
Sbjct: 187 RVEPSTKLLCE-VNKDPFRQLRLLNKTYGFVITLFEIGQTVPSLWNSTLEFIEKYPETLA 245

Query: 502 HKNPFSWLAFSAGPR 458
             N + W++   G +
Sbjct: 246 KNNLWEWISDDNGKK 260


>SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 647

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = +3

Query: 507 NESNRSGMNSRGFSNTSGFRCIWNMFNTTDVPLDSFRPPTSASFVI 644
           N+SN+ G+N + F++    R I  +F    + L S  PP+S  F I
Sbjct: 429 NDSNKIGLNPKSFTDEE--REILTLFRNPPMRLSS-EPPSSNGFSI 471


>SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 217

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 10/32 (31%), Positives = 21/32 (65%)
 Frame = +3

Query: 33  NTSVPIQQKHILKNKTTNMIKLR*YIAHIIFH 128
           N  +PI +K +LKN+  +++ ++   +H+ FH
Sbjct: 122 NKLIPIPKKKVLKNRAKSLLSIK---SHVHFH 150


>SPAC607.05 |rpn9||19S proteasome regulatory subunit
           Rpn9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 381

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -3

Query: 612 NYLKEHRSC*TYSRCIEIQKCSRS 541
           +Y + +R C  Y  CI++ KCS +
Sbjct: 174 DYAQYYRHCLLYLSCIDLDKCSHT 197


>SPCC663.03 |pmd1||leptomycin efflux transporter
            Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1362

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +3

Query: 318  LTPFWERSIRSAHNIGSISTGTSLKFLTNVDSVTFISI 431
            +T      I+S   +   + GT  + LTN+ SVT +S+
Sbjct: 897  ITTSLSTKIQSLEGLSGPTLGTFFQILTNIISVTILSL 934


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,850,558
Number of Sequences: 5004
Number of extensions: 60107
Number of successful extensions: 139
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)