Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P15_pT_D07
(774 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF016425-12|AAB65336.1| 190|Caenorhabditis elegans Histone h1 l... 64 1e-10
AF017812-1|AAB70559.1| 191|Caenorhabditis elegans histone H1.2 ... 62 6e-10
AF017811-1|AAB70666.1| 191|Caenorhabditis elegans histone H1.2 ... 62 6e-10
AC084197-2|AAM44399.1| 241|Caenorhabditis elegans Histone h1 li... 62 6e-10
AF068708-3|AAC17754.1| 253|Caenorhabditis elegans Histone h1 li... 61 1e-09
AF026521-1|AAB82588.1| 253|Caenorhabditis elegans histone H1.4 ... 61 1e-09
AF005371-1|AAB81029.1| 253|Caenorhabditis elegans histone H1.4 ... 61 1e-09
Z78239-1|CAB01632.1| 232|Caenorhabditis elegans Hypothetical pr... 59 3e-09
AF002679-1|AAB60893.1| 232|Caenorhabditis elegans histone H1-li... 59 3e-09
Z79603-3|CAB01892.1| 208|Caenorhabditis elegans Hypothetical pr... 59 4e-09
AF017810-1|AAB70665.1| 208|Caenorhabditis elegans histone H1.1 ... 59 4e-09
AF005372-1|AAB81030.1| 225|Caenorhabditis elegans histone H1.5 ... 57 1e-08
AF003145-1|AAB57720.1| 225|Caenorhabditis elegans Histone h1 li... 57 1e-08
X53277-1|CAA37372.1| 208|Caenorhabditis elegans histone H1 prot... 56 4e-08
U41549-2|AAA83282.1| 208|Caenorhabditis elegans Histone h1 like... 54 1e-07
AF012253-1|AAB66471.1| 208|Caenorhabditis elegans histone H1.3 ... 54 1e-07
AL117206-6|CAB60450.1| 734|Caenorhabditis elegans Hypothetical ... 37 0.014
>AF016425-12|AAB65336.1| 190|Caenorhabditis elegans Histone h1 like
protein 6 protein.
Length = 190
Score = 63.7 bits (148), Expect = 1e-10
Identities = 35/79 (44%), Positives = 46/79 (58%), Gaps = 2/79 (2%)
Frame = -2
Query: 773 KAKPSHPKTSEMVNSXIAELKERSGSSLQAIKKYIAAQYKV--DAEKLAPFIRKYLKNAV 600
K +HP MV + I+ LKER GSS AI KYI A YK+ +K+ +R LK V
Sbjct: 30 KTAAAHPPFINMVTAAISSLKERKGSSKIAILKYITANYKLGDQVKKINSNLRSALKKGV 89
Query: 599 ESGTLIQTKGKGASGSFKL 543
S L+QT G GA+G F++
Sbjct: 90 ASKALVQTVGTGATGRFRV 108
>AF017812-1|AAB70559.1| 191|Caenorhabditis elegans histone H1.2
protein.
Length = 191
Score = 61.7 bits (143), Expect = 6e-10
Identities = 35/79 (44%), Positives = 45/79 (56%), Gaps = 2/79 (2%)
Frame = -2
Query: 773 KAKPSHPKTSEMVNSXIAELKERSGSSLQAIKKYIAAQYKVDAE--KLAPFIRKYLKNAV 600
K +HP MV + I+ LKER GSS AI KYI A YKV + K+ +R L V
Sbjct: 33 KVAAAHPPFINMVTAAISSLKERKGSSKIAILKYITANYKVGDQLTKINSRLRAALNKGV 92
Query: 599 ESGTLIQTKGKGASGSFKL 543
S L+Q+ G GASG F++
Sbjct: 93 ASKALVQSVGNGASGRFRV 111
>AF017811-1|AAB70666.1| 191|Caenorhabditis elegans histone H1.2
protein.
Length = 191
Score = 61.7 bits (143), Expect = 6e-10
Identities = 35/79 (44%), Positives = 45/79 (56%), Gaps = 2/79 (2%)
Frame = -2
Query: 773 KAKPSHPKTSEMVNSXIAELKERSGSSLQAIKKYIAAQYKVDAE--KLAPFIRKYLKNAV 600
K +HP MV + I+ LKER GSS AI KYI A YKV + K+ +R L V
Sbjct: 33 KVAAAHPPFINMVTAAISSLKERKGSSKIAILKYITANYKVGDQLTKINSRLRAALNKGV 92
Query: 599 ESGTLIQTKGKGASGSFKL 543
S L+Q+ G GASG F++
Sbjct: 93 ASKALVQSVGNGASGRFRV 111
>AC084197-2|AAM44399.1| 241|Caenorhabditis elegans Histone h1 like
protein 2, isoforma protein.
Length = 241
Score = 61.7 bits (143), Expect = 6e-10
Identities = 35/79 (44%), Positives = 45/79 (56%), Gaps = 2/79 (2%)
Frame = -2
Query: 773 KAKPSHPKTSEMVNSXIAELKERSGSSLQAIKKYIAAQYKVDAE--KLAPFIRKYLKNAV 600
K +HP MV + I+ LKER GSS AI KYI A YKV + K+ +R L V
Sbjct: 83 KVAAAHPPFINMVTAAISSLKERKGSSKIAILKYITANYKVGDQLTKINSRLRAALNKGV 142
Query: 599 ESGTLIQTKGKGASGSFKL 543
S L+Q+ G GASG F++
Sbjct: 143 ASKALVQSVGNGASGRFRV 161
>AF068708-3|AAC17754.1| 253|Caenorhabditis elegans Histone h1 like
protein 4 protein.
Length = 253
Score = 60.9 bits (141), Expect = 1e-09
Identities = 31/79 (39%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Frame = -2
Query: 773 KAKPSHPKTSEMVNSXIAELKERSGSSLQAIKKYIAAQYKV--DAEKLAPFIRKYLKNAV 600
KA +HP MV I+ +K+R G S AI KYI +Y + A K+ +RK L +
Sbjct: 47 KADAAHPPFINMVTEAISSIKDRKGPSRAAILKYITTKYTLGDQANKINAHLRKALNKGL 106
Query: 599 ESGTLIQTKGKGASGSFKL 543
ES +Q G GA+G F+L
Sbjct: 107 ESNAFVQASGNGANGRFRL 125
>AF026521-1|AAB82588.1| 253|Caenorhabditis elegans histone H1.4
protein.
Length = 253
Score = 60.9 bits (141), Expect = 1e-09
Identities = 31/79 (39%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Frame = -2
Query: 773 KAKPSHPKTSEMVNSXIAELKERSGSSLQAIKKYIAAQYKV--DAEKLAPFIRKYLKNAV 600
KA +HP MV I+ +K+R G S AI KYI +Y + A K+ +RK L +
Sbjct: 47 KADAAHPPFINMVTEAISSIKDRKGPSRAAILKYITTKYTLGDQANKINAHLRKALNKGL 106
Query: 599 ESGTLIQTKGKGASGSFKL 543
ES +Q G GA+G F+L
Sbjct: 107 ESNAFVQASGNGANGRFRL 125
>AF005371-1|AAB81029.1| 253|Caenorhabditis elegans histone H1.4
protein.
Length = 253
Score = 60.9 bits (141), Expect = 1e-09
Identities = 31/79 (39%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Frame = -2
Query: 773 KAKPSHPKTSEMVNSXIAELKERSGSSLQAIKKYIAAQYKV--DAEKLAPFIRKYLKNAV 600
KA +HP MV I+ +K+R G S AI KYI +Y + A K+ +RK L +
Sbjct: 47 KADAAHPPFINMVTEAISSIKDRKGPSRAAILKYITTKYTLGDQANKINAHLRKALNKGL 106
Query: 599 ESGTLIQTKGKGASGSFKL 543
ES +Q G GA+G F+L
Sbjct: 107 ESNAFVQASGNGANGRFRL 125
>Z78239-1|CAB01632.1| 232|Caenorhabditis elegans Hypothetical
protein C30G7.1 protein.
Length = 232
Score = 59.3 bits (137), Expect = 3e-09
Identities = 31/74 (41%), Positives = 44/74 (59%), Gaps = 2/74 (2%)
Frame = -2
Query: 758 HPKTSEMVNSXIAELKERSGSSLQAIKKYIAAQYKV--DAEKLAPFIRKYLKNAVESGTL 585
HP +M+ I + +GSS AI KYIA Y V + K+ +R LK AV+SG +
Sbjct: 37 HPSYMDMIKGAIQAIDNGTGSSKAAILKYIAQNYHVGENLPKVNNHLRSVLKKAVDSGDI 96
Query: 584 IQTKGKGASGSFKL 543
QT+G GA+GSF++
Sbjct: 97 EQTRGHGATGSFRM 110
>AF002679-1|AAB60893.1| 232|Caenorhabditis elegans histone H1-like
protein protein.
Length = 232
Score = 59.3 bits (137), Expect = 3e-09
Identities = 31/74 (41%), Positives = 44/74 (59%), Gaps = 2/74 (2%)
Frame = -2
Query: 758 HPKTSEMVNSXIAELKERSGSSLQAIKKYIAAQYKV--DAEKLAPFIRKYLKNAVESGTL 585
HP +M+ I + +GSS AI KYIA Y V + K+ +R LK AV+SG +
Sbjct: 37 HPSYMDMIKGAIQAIDNGTGSSKAAILKYIAQNYHVGENLPKVNNHLRSVLKKAVDSGDI 96
Query: 584 IQTKGKGASGSFKL 543
QT+G GA+GSF++
Sbjct: 97 EQTRGHGATGSFRM 110
>Z79603-3|CAB01892.1| 208|Caenorhabditis elegans Hypothetical
protein M163.3 protein.
Length = 208
Score = 58.8 bits (136), Expect = 4e-09
Identities = 30/79 (37%), Positives = 47/79 (59%), Gaps = 2/79 (2%)
Frame = -2
Query: 773 KAKPSHPKTSEMVNSXIAELKERSGSSLQAIKKYIAAQYKV--DAEKLAPFIRKYLKNAV 600
KA +HP M+ I +LK+R G+S QAI K+I+ YK+ + ++ +R+ LK V
Sbjct: 33 KAPVAHPPYINMIKEAIKQLKDRKGASKQAILKFISQNYKLGDNVIQINAHLRQALKRGV 92
Query: 599 ESGTLIQTKGKGASGSFKL 543
S L+Q G GA+G F++
Sbjct: 93 TSKALVQAAGSGANGRFRV 111
>AF017810-1|AAB70665.1| 208|Caenorhabditis elegans histone H1.1
protein.
Length = 208
Score = 58.8 bits (136), Expect = 4e-09
Identities = 30/79 (37%), Positives = 47/79 (59%), Gaps = 2/79 (2%)
Frame = -2
Query: 773 KAKPSHPKTSEMVNSXIAELKERSGSSLQAIKKYIAAQYKV--DAEKLAPFIRKYLKNAV 600
KA +HP M+ I +LK+R G+S QAI K+I+ YK+ + ++ +R+ LK V
Sbjct: 33 KAPVAHPPYINMIKEAIKQLKDRKGASKQAILKFISQNYKLGDNVIQINAHLRQALKRGV 92
Query: 599 ESGTLIQTKGKGASGSFKL 543
S L+Q G GA+G F++
Sbjct: 93 TSKALVQAAGSGANGRFRV 111
>AF005372-1|AAB81030.1| 225|Caenorhabditis elegans histone H1.5
protein.
Length = 225
Score = 57.2 bits (132), Expect = 1e-08
Identities = 31/79 (39%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Frame = -2
Query: 773 KAKPSHPKTSEMVNSXIAELKERSGSSLQAIKKYIAAQYKV--DAEKLAPFIRKYLKNAV 600
K +HP M+ ++ LK+R GSS AI K+I A+Y + K +R LK V
Sbjct: 33 KVVAAHPPFINMITEAVSNLKDRKGSSRVAIFKFITAKYTLGDQVNKTNAHLRSALKKGV 92
Query: 599 ESGTLIQTKGKGASGSFKL 543
S L+QT G GA+G F+L
Sbjct: 93 VSKVLVQTNGIGANGRFRL 111
>AF003145-1|AAB57720.1| 225|Caenorhabditis elegans Histone h1 like
protein 5 protein.
Length = 225
Score = 57.2 bits (132), Expect = 1e-08
Identities = 31/79 (39%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Frame = -2
Query: 773 KAKPSHPKTSEMVNSXIAELKERSGSSLQAIKKYIAAQYKV--DAEKLAPFIRKYLKNAV 600
K +HP M+ ++ LK+R GSS AI K+I A+Y + K +R LK V
Sbjct: 33 KVVAAHPPFINMITEAVSNLKDRKGSSRVAIFKFITAKYTLGDQVNKTNAHLRSALKKGV 92
Query: 599 ESGTLIQTKGKGASGSFKL 543
S L+QT G GA+G F+L
Sbjct: 93 VSKVLVQTNGIGANGRFRL 111
>X53277-1|CAA37372.1| 208|Caenorhabditis elegans histone H1
protein.
Length = 208
Score = 55.6 bits (128), Expect = 4e-08
Identities = 29/79 (36%), Positives = 46/79 (58%), Gaps = 2/79 (2%)
Frame = -2
Query: 773 KAKPSHPKTSEMVNSXIAELKERSGSSLQAIKKYIAAQYKV--DAEKLAPFIRKYLKNAV 600
KA +HP + I +LK+R G+S QAI K+I+ YK+ + ++ R+ LK V
Sbjct: 33 KAPVAHPPYINTIKEAIKQLKDRKGASKQAILKFISQNYKLGDNVIQINAHHRQALKRGV 92
Query: 599 ESGTLIQTKGKGASGSFKL 543
S L+Q +G GA+G F++
Sbjct: 93 TSKALVQARGSGANGRFRV 111
>U41549-2|AAA83282.1| 208|Caenorhabditis elegans Histone h1 like
protein 3 protein.
Length = 208
Score = 54.0 bits (124), Expect = 1e-07
Identities = 34/78 (43%), Positives = 43/78 (55%), Gaps = 3/78 (3%)
Frame = -2
Query: 767 KP-SHPKTSEMVNSXIAELKERSGSSLQAIKKYIAAQYKVDAE--KLAPFIRKYLKNAVE 597
KP +HP MV + I LKER GSS AI KYI Y V + K+ +R L V
Sbjct: 34 KPVAHPPYINMVTAAINGLKERKGSSKIAILKYITKNYNVGDQIIKINARLRDTLNKGVV 93
Query: 596 SGTLIQTKGKGASGSFKL 543
S L+Q+ G GASG F++
Sbjct: 94 SKALVQSVGTGASGRFRV 111
>AF012253-1|AAB66471.1| 208|Caenorhabditis elegans histone H1.3
protein.
Length = 208
Score = 54.0 bits (124), Expect = 1e-07
Identities = 34/78 (43%), Positives = 43/78 (55%), Gaps = 3/78 (3%)
Frame = -2
Query: 767 KP-SHPKTSEMVNSXIAELKERSGSSLQAIKKYIAAQYKVDAE--KLAPFIRKYLKNAVE 597
KP +HP MV + I LKER GSS AI KYI Y V + K+ +R L V
Sbjct: 34 KPVAHPPYINMVTAAINGLKERKGSSKIAILKYITKNYNVGDQIIKINARLRDTLNKGVV 93
Query: 596 SGTLIQTKGKGASGSFKL 543
S L+Q+ G GASG F++
Sbjct: 94 SKALVQSVGTGASGRFRV 111
>AL117206-6|CAB60450.1| 734|Caenorhabditis elegans Hypothetical
protein Y67A10A.9 protein.
Length = 734
Score = 37.1 bits (82), Expect = 0.014
Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 3/67 (4%)
Frame = -2
Query: 749 TSEMVNSXIAELKERS---GSSLQAIKKYIAAQYKVDAEKLAPFIRKYLKNAVESGTLIQ 579
TS++V+ + E + S S+ Q K+ +A Y+VD+ L + + YLKNA+E G + Q
Sbjct: 244 TSQLVSIELVENGDGSELLSSNGQNFKRSFSAVYRVDSSALRQWEKSYLKNAMEKGDVEQ 303
Query: 578 TKGKGAS 558
+ AS
Sbjct: 304 NFKRTAS 310
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,371,688
Number of Sequences: 27780
Number of extensions: 134271
Number of successful extensions: 397
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 368
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 382
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1861650246
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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