Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_pT_D05
         (339 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0785 + 6095041-6095135,6095455-6095760,6098458-6098554,609...    27   2.8  
04_01_0485 + 6389646-6389665,6390063-6390123,6390231-6390356,639...    27   2.8  
02_04_0290 - 21627733-21628353,21628424-21628663,21628874-216292...    26   6.6  
04_04_0831 + 28495516-28495701,28496862-28497010,28498447-28498585     26   8.7  
04_03_0068 - 10631827-10631947,10632037-10632112,10632152-106330...    26   8.7  

>07_01_0785 +
           6095041-6095135,6095455-6095760,6098458-6098554,
           6098943-6098999,6099202-6099751,6099922-6100234,
           6100245-6100335,6101002-6101469
          Length = 658

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 15/45 (33%), Positives = 20/45 (44%)
 Frame = +3

Query: 66  LIKCNKNMVMRMSMRSMQPENMQSTQSTPGVRCTQQRPEQYMQQL 200
           LI+  + + M      M+P   Q + S P   CT Q P Q   QL
Sbjct: 192 LIQYARGIFMDQHGIHMKPTLSQHSTSNPVTHCTHQHPIQVQMQL 236


>04_01_0485 +
           6389646-6389665,6390063-6390123,6390231-6390356,
           6390441-6390518,6391304-6391429,6391630-6391731,
           6391802-6391948,6392237-6392360,6393608-6393737,
           6393908-6394130
          Length = 378

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +2

Query: 251 RATKIKYLNILIVCLVRRRVTDHRPAEF 334
           RA  +  L I +V LVR++ T+H P  F
Sbjct: 299 RAASLDKLEIHVVGLVRQKFTNHHPTAF 326


>02_04_0290 -
           21627733-21628353,21628424-21628663,21628874-21629214,
           21630934-21631612,21631893-21631962,21632063-21632190
          Length = 692

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 13/39 (33%), Positives = 16/39 (41%)
 Frame = +3

Query: 129 MQSTQSTPGVRCTQQRPEQYMQQLQGTCSSPAEAWLTRK 245
           ++S+ S PG       P    Q L GT  S  E W   K
Sbjct: 549 LRSSSSAPGADAAPAMPTTRRQLLDGTPQSFQEGWAAAK 587


>04_04_0831 +
          28495516-28495701,28496862-28497010,28498447-28498585
          Length = 157

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -1

Query: 69 LNKNTSKFMKPNMLM*YILLL 7
          LNKNT  FM P +   YIL+L
Sbjct: 14 LNKNTEWFMYPGVWTTYILIL 34


>04_03_0068 -
           10631827-10631947,10632037-10632112,10632152-10633021,
           10650975-10651599
          Length = 563

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 12/50 (24%), Positives = 25/50 (50%)
 Frame = +3

Query: 105 MRSMQPENMQSTQSTPGVRCTQQRPEQYMQQLQGTCSSPAEAWLTRKPGE 254
           M+S+   ++   Q+   V    + PE + + ++    +P +  LT+KP E
Sbjct: 187 MKSIADGSIAGHQAAGPVYLQGENPEAFFRSVRPQVVAPQKTLLTKKPAE 236


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,499,760
Number of Sequences: 37544
Number of extensions: 66862
Number of successful extensions: 194
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 470052804
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)