Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_pT_D04
         (741 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8I434 Cluster: Putative uncharacterized protein PFE033...    36   1.4  
UniRef50_Q05FQ6 Cluster: Seryl-tRNA synthetase; n=1; Candidatus ...    33   7.4  
UniRef50_Q54DC5 Cluster: Putative uncharacterized protein; n=2; ...    33   9.7  

>UniRef50_Q8I434 Cluster: Putative uncharacterized protein PFE0335w;
           n=3; Plasmodium|Rep: Putative uncharacterized protein
           PFE0335w - Plasmodium falciparum (isolate 3D7)
          Length = 929

 Score = 35.5 bits (78), Expect = 1.4
 Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
 Frame = +3

Query: 528 YHIGRIMVWYRYHNTTKYYQAGLGRLIVPVPLICNSTMVFXEINFVNYSKFKNIMN--LY 701
           +H+  ++V   Y+N T+ Y+     + + + L+ N   +    NF+N   F   +N  +Y
Sbjct: 340 FHVDTLLVLAEYYNETRNYEVANKFIKMSILLLQNIFHINFHPNFLN-KNFNIFINPYIY 398

Query: 702 DKKCIYK 722
           D KC++K
Sbjct: 399 DNKCLFK 405


>UniRef50_Q05FQ6 Cluster: Seryl-tRNA synthetase; n=1; Candidatus
           Carsonella ruddii PV|Rep: Seryl-tRNA synthetase -
           Carsonella ruddii (strain PV)
          Length = 336

 Score = 33.1 bits (72), Expect = 7.4
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +3

Query: 645 FXEINFVNYSKFKNIMNLYDKKCIYKKKTDEF 740
           F +INF NY+   N  N Y+K  IY  K   F
Sbjct: 38  FFKINFTNYNYIYNTFNNYNKNIIYSNKKKNF 69


>UniRef50_Q54DC5 Cluster: Putative uncharacterized protein; n=2;
           Dictyostelium discoideum AX4|Rep: Putative
           uncharacterized protein - Dictyostelium discoideum AX4
          Length = 313

 Score = 32.7 bits (71), Expect = 9.7
 Identities = 21/55 (38%), Positives = 31/55 (56%)
 Frame = +3

Query: 531 HIGRIMVWYRYHNTTKYYQAGLGRLIVPVPLICNSTMVFXEINFVNYSKFKNIMN 695
           H   ++ +Y    TTK  +A L  L+VPV  I NS+++    NF N SK  N++N
Sbjct: 89  HYATVVKFYGKFPTTK--EASLRILLVPVISIFNSSILKSTFNFSNLSKI-NLVN 140


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 656,624,844
Number of Sequences: 1657284
Number of extensions: 12325473
Number of successful extensions: 24182
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 23277
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24177
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 60500186565
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)