Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_pT_D03
         (724 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo...    29   0.51 
SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificit...    28   1.6  
SPAC9.13c |cwf16|SPAPJ735.01c|splicing factor |Schizosaccharomyc...    27   3.6  
SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1 ...    26   4.7  
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo...    25   8.3  

>SPBC146.09c |lsd1|swm1, saf110|histone demethylase
           SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1000

 Score = 29.5 bits (63), Expect = 0.51
 Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
 Frame = +2

Query: 158 VEEKSQMLPALPAINYCTVHIYSSGILVIPSINLNK*Q--QTQNYDTRNVHTRNKNRI 325
           V EKS +   + A N C V++ +  ++ +P+++ +      +Q      VHTRN+  I
Sbjct: 322 VSEKSSLATTVNATNECMVNLLTDSLIGMPTLDSDPLYIISSQQLSLDAVHTRNREFI 379


>SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificity
           factor complex subunit Rna14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 733

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 11/20 (55%), Positives = 17/20 (85%)
 Frame = +3

Query: 78  LIDNIVKTEIPXIVIRNGSA 137
           LID+I+K++IP I +RN +A
Sbjct: 706 LIDHIIKSDIPFIRLRNANA 725


>SPAC9.13c |cwf16|SPAPJ735.01c|splicing factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +1

Query: 97  RRKSLX*SYVTVALLRYYIVCRRKVADVASATGDK 201
           R++     Y ++ +LR+YI C R  A++   T  K
Sbjct: 64  RKEKTGEKYFSIDILRFYIRCTRCAAEITFITDPK 98


>SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 581

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 710 IILITFDIPIXGPKCDLNAFF 648
           IIL+ FD P+ GP   L ++F
Sbjct: 179 IILVIFDDPVYGPSSFLTSYF 199


>SPCC1739.11c |cdc11||SIN component scaffold protein
            Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1045

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +3

Query: 246  HRLI*INNNKLKIMTQEMFILETKIEYQILHSKYTPININIY 371
            HRL  + N ++K M     IL    +  +L  +  P+N NIY
Sbjct: 916  HRLYLVGN-RIKKMRNLCDILANLKQLNVLDLRMNPLNFNIY 956


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,735,074
Number of Sequences: 5004
Number of extensions: 54445
Number of successful extensions: 127
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)