Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_pT_D02
         (753 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3 s...    27   2.9  
SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase Met9|...    27   3.8  
SPAC17H9.08 |||mitochondrial coenzyme A transporter|Schizosaccha...    26   5.0  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   8.8  

>SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3
           subunit Alp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 821

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 12/16 (75%), Positives = 12/16 (75%)
 Frame = +1

Query: 343 SQTYIHNK*LIYYFLY 390
           SQT IHNK  I YFLY
Sbjct: 86  SQTVIHNKSQILYFLY 101


>SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase
           Met9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 603

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 13/33 (39%), Positives = 22/33 (66%)
 Frame = +3

Query: 480 PLFMDITM*SSGTSEPFLRKLTLPLINLLQTFF 578
           P+F+D+T  + GTS     +LT  ++N++QT F
Sbjct: 47  PMFVDVTWGAGGTSS----ELTPGIVNVIQTDF 75


>SPAC17H9.08 |||mitochondrial coenzyme A
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 326

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 12/17 (70%), Positives = 12/17 (70%)
 Frame = +2

Query: 677 LSAISSRWAYITNTGKN 727
           L  I  R AYITNTGKN
Sbjct: 137 LELIRVRLAYITNTGKN 153


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = -3

Query: 316  SAMPLNNTTIFMFSLIYLIRNLQLKYNILKILSLDGFNENV 194
            SA  L+N+T+     I+  R LQL+  +L+ L+   F E++
Sbjct: 3414 SASMLSNSTVEEKKQIFRQRALQLRMQLLETLNSSVFPESI 3454


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,935,486
Number of Sequences: 5004
Number of extensions: 57678
Number of successful extensions: 114
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)