Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_pT_C20
         (389 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces...    26   2.4  
SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid alpha...    26   2.4  
SPBC18E5.11c |edc3|SPBC23G7.01c|enhancer of mRNA decapping Edc3 ...    25   4.1  
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam...    24   9.5  
SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|ch...    24   9.5  

>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1639

 Score = 25.8 bits (54), Expect = 2.4
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +2

Query: 185 YKLSIXIELERGTEKIIFLYSTTTSITLVAAPTPSXKYYNSTST 316
           Y  ++   +ER    I   YS + S+ L+  PT     +N++ST
Sbjct: 533 YPENLIASIERLIPFIFSSYSNSQSVPLLPCPTQRHLLFNTSST 576


>SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid
           alpha-glucosyltransferase Alg10|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 445

 Score = 25.8 bits (54), Expect = 2.4
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +2

Query: 182 IYKLSIXIELERGTEKIIFLYSTTTSITLVAAPTPSXKYY 301
           +Y   + I   + T    FL  +TT +TLV AP    +Y+
Sbjct: 350 LYYFFLDISKLQMTSLTFFLLISTTILTLVPAPLVEFRYF 389


>SPBC18E5.11c |edc3|SPBC23G7.01c|enhancer of mRNA decapping Edc3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 454

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -2

Query: 157 LLTPLNFINLVLLQLNIMVGKLLTHSFTSYLMKV 56
           LLTP N  N  LL      G + T +F  +L K+
Sbjct: 302 LLTPFNVDNRQLLMFQAAGGYIPTENFDQFLNKL 335


>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
           Mam3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -2

Query: 91  LTHSFTSYLMKVLISSINYYTPTLQNVCS 5
           +T S TSY   ++ SS   Y+ +L  VCS
Sbjct: 584 ITPSNTSYTSSLIPSSSTDYSSSLITVCS 612


>SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 743

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +2

Query: 263 TLVAAPTPSXKYYNSTST 316
           TLV  P  S KY+ S+ST
Sbjct: 120 TLVTTPIGSQKYFGSSST 137


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,309,679
Number of Sequences: 5004
Number of extensions: 20894
Number of successful extensions: 75
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 128029482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)