Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_pT_C20
         (389 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   2.9  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    21   6.6  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    21   6.6  
AY545000-1|AAS50159.2|  126|Apis mellifera profilin protein.           20   8.7  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    20   8.7  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 2.9
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +2

Query: 245 STTTSITLVAAPTPSXKYYNSTSTKPVPVE 334
           +TTT+ T     TP+     S +T P  V+
Sbjct: 665 TTTTTTTTTTTTTPNTTQNASATTPPPQVD 694


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 20.6 bits (41), Expect = 6.6
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = -2

Query: 148 PLNFINLVLLQ 116
           P+N INL+LLQ
Sbjct: 76  PVNNINLILLQ 86


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 20.6 bits (41), Expect = 6.6
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = +3

Query: 327 RSRAAVSARDDGG 365
           RSR A   RDDGG
Sbjct: 25  RSRIARLGRDDGG 37


>AY545000-1|AAS50159.2|  126|Apis mellifera profilin protein.
          Length = 126

 Score = 20.2 bits (40), Expect = 8.7
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = -1

Query: 224 LCRAPVQCXLTTCRYCVSLYSKP 156
           L +  V C  TT    VSLY  P
Sbjct: 82  LGKVGVHCMKTTQAVVVSLYEDP 104


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 20.2 bits (40), Expect = 8.7
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +2

Query: 257 SITLVAAPTPSXKYYNSTSTKPVP 328
           S+TLV A TP      ST+    P
Sbjct: 29  SLTLVKAETPEHLAGTSTTAAATP 52


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,997
Number of Sequences: 438
Number of extensions: 1596
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9514659
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)