Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P15_pT_C13
(749 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyc... 38 0.002
SPAC15F9.03c |nxt2|nft2, ntf2, ntf2, nft2, SPAC1B9.01c|nuclear t... 38 0.002
SPAC23C11.11 |cka1|orb5|serine/threonine protein kinase Cka1|Sch... 27 2.9
SPAC823.09c |||L-asparaginase |Schizosaccharomyces pombe|chr 1||... 27 2.9
SPAP27G11.08c |meu32|mug11|sequence orphan|Schizosaccharomyces p... 27 2.9
SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat protein|Schizo... 27 3.8
SPCC970.04c |mob2||protein kinase activator Mob2|Schizosaccharom... 26 6.6
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 25 8.7
SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr ... 25 8.7
SPBC776.10c |cog6||Golgi transport complex peripheral subunit Co... 25 8.7
>SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 434
Score = 37.9 bits (84), Expect = 0.002
Identities = 19/60 (31%), Positives = 32/60 (53%)
Frame = -2
Query: 727 IVTAVDSQPMFDGGVLINVLGRLKCDEDPPHLYMQTFVLKPLGDSFYVQHDIFRLGIHDI 548
+++ VDS +GG++I VLG + + QTF L + ++V +DIFR D+
Sbjct: 80 LISNVDSLASSNGGIVIQVLGEMSNKGKLSRKFAQTFFLAEQPNGYFVLNDIFRFLREDV 139
>SPAC15F9.03c |nxt2|nft2, ntf2, ntf2, nft2, SPAC1B9.01c|nuclear
transport factor Nxt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 123
Score = 37.5 bits (83), Expect = 0.002
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Frame = -2
Query: 745 FXKITRIVTAVDSQPM-FDGGVLINVLGRLKCDEDP-PHLYMQTFVLKPLGDSFYVQHDI 572
F ++ ++ +D+QP G V++ V G L DE+ Y Q F L ++YV +D+
Sbjct: 58 FQRVQHRISTLDAQPTGTTGSVIVMVTGELLLDEEQMAQRYSQVFHLVNNNGNYYVLNDL 117
Query: 571 FRL 563
FRL
Sbjct: 118 FRL 120
>SPAC23C11.11 |cka1|orb5|serine/threonine protein kinase
Cka1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 332
Score = 27.1 bits (57), Expect = 2.9
Identities = 13/38 (34%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Frame = -3
Query: 465 LDIW-YTLYFSCIYFVKEFMKLKGRDDYEIMIMIDLVI 355
LDIW + + F+ + F K+ +GRD+Y+ ++ I V+
Sbjct: 217 LDIWSFGVMFAALIFKKDTF-FRGRDNYDQLVKIAKVL 253
>SPAC823.09c |||L-asparaginase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 285
Score = 27.1 bits (57), Expect = 2.9
Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = +3
Query: 309 FLCNENQILIL-DYPVRSLNRSLS*FHNRLV 398
F C +Q+L+ D V SLN+ ++ FH +L+
Sbjct: 245 FACRSSQLLVSEDNVVSSLNKLINDFHGKLI 275
>SPAP27G11.08c |meu32|mug11|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 392
Score = 27.1 bits (57), Expect = 2.9
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = +3
Query: 261 HFYNLFVYKHVTIYLHFLCNENQILILDYPVRS 359
H N+F+Y+H + + FL + + D P++S
Sbjct: 358 HLENVFLYRHYRVCVGFLNKQIYVFSSDEPLKS 390
>SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 509
Score = 26.6 bits (56), Expect = 3.8
Identities = 17/61 (27%), Positives = 27/61 (44%)
Frame = +3
Query: 555 WMPKRKMSC*T*NESPSGFNTNVCMYRCGGSSSHFNLPRTLIKTPPSNIGWESTAVTILV 734
W + K C + SP G N+++ +YR + F++P I GW TI+
Sbjct: 383 WSRRYKEFCYSLGYSPEGTNSSLIVYRWPQLTKVFDIPSAAID------GWGQDLRTIMA 436
Query: 735 I 737
I
Sbjct: 437 I 437
>SPCC970.04c |mob2||protein kinase activator
Mob2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 244
Score = 25.8 bits (54), Expect = 6.6
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -3
Query: 456 WYTLYFSCIYFVKEFMKLKGRDDYEIMIMIDLVIEQGNL 340
W + + I F KEF L RD + +I ++ QGN+
Sbjct: 206 WNSFFAHFIAFGKEFQLLDKRDTAPLKDLIVVLENQGNI 244
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 25.4 bits (53), Expect = 8.7
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +3
Query: 609 FNTNVCMYRCGGSSSHFNLPRTLIKTPPSNIGWEST 716
F+ C+Y S F+ R L+ PPS I +ST
Sbjct: 1267 FSILTCIYNRITSGQGFSYSRLLVYLPPSQIEKKST 1302
>SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 774
Score = 25.4 bits (53), Expect = 8.7
Identities = 15/54 (27%), Positives = 28/54 (51%)
Frame = +3
Query: 6 KMFTYNAKSSR*QR*IKHKKMPNLVTAIHNFLIALIYLDNQTDLRSMMKLVFVC 167
K F+Y++ ++ K +VT + NFL+ L+Y D S++ V++C
Sbjct: 158 KSFSYSSLANTFSLISSTKSRIRIVTLLTNFLLTLLYADPD----SLIATVWLC 207
>SPBC776.10c |cog6||Golgi transport complex peripheral subunit Cog6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 675
Score = 25.4 bits (53), Expect = 8.7
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +2
Query: 437 EKYNVYQMSRILIQQLYVISNFKLSISSCCVCP 535
E + +M +L +LY ISN LSI+ + P
Sbjct: 410 EDFTYQRMKTVLDDELYTISNTNLSITDDLLPP 442
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,120,601
Number of Sequences: 5004
Number of extensions: 65707
Number of successful extensions: 143
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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