Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_pT_C12
         (736 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30D10.16 |pha2||phrenate dehydratase|Schizosaccharomyces pom...    28   1.6  
SPBC725.05c |||nucleotide pyrophosphatase |Schizosaccharomyces p...    27   2.1  
SPAC5D6.12 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    27   3.7  
SPAC31G5.15 |||phosphatidylserine decarboxylase |Schizosaccharom...    26   4.8  
SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|ch...    26   6.4  
SPBC1921.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   6.4  
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    25   8.5  
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu...    25   8.5  

>SPBC30D10.16 |pha2||phrenate dehydratase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 287

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 16/57 (28%), Positives = 27/57 (47%)
 Frame = +1

Query: 538 FGHQFVAERLLVFLADVIEQRVGSLIVDVPGEADVVVLPADDAEAGRRHLDAVGVVL 708
           F  +F+    L  L  +  ++V   ++ +    +  V+PA D   GR  + AVG VL
Sbjct: 41  FALKFILICFLAVLEALSSRQVDYAVLPIENSTNGAVIPAYDLLKGRDDIQAVGEVL 97


>SPBC725.05c |||nucleotide pyrophosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 485

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +3

Query: 351 KRIHCPEQLIVIPFTNIPNRYRVITMLYEDS 443
           + +H P  +   P    PN Y ++T LY +S
Sbjct: 103 RNVHVPFLIPSFPSITFPNHYTIVTGLYPES 133


>SPAC5D6.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 314

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +2

Query: 29  CYKPIYXFCTTSLWCGCTNNIFSLH 103
           C  P+Y     S+W GC +  F LH
Sbjct: 239 CSAPVYNQAILSVWQGCKDPNFVLH 263


>SPAC31G5.15 |||phosphatidylserine decarboxylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 980

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = -2

Query: 669 FRVVGRKYDDVSLTGHVNYETPYALLNNISQKYKESFGDELMTKL 535
           +RV+  +Y D+   GH+     YA+L+ +      S  D++ T+L
Sbjct: 470 WRVMLAQYGDIE-DGHIGKLGMYAVLDTLGSNIPNSMVDDIYTEL 513


>SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 500

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +1

Query: 61  ISLVRLY*QYIFFTFNSTNGLSIYFVHLTVAS 156
           ISL+ LY    F    S NG ++YF  + V+S
Sbjct: 134 ISLIFLYPMLCFANPKSANGYTLYFRPMVVSS 165


>SPBC1921.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 117

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +2

Query: 140 T*PWPRRERRVQHERWSS 193
           T PW ++++  QHE W+S
Sbjct: 49  TIPWKKKKKSEQHELWAS 66


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2344

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +3

Query: 33  ISRFXSFVLHLSGAVVLTIYFLYIQLYKRIINLF 134
           ++RF S+V H+S  V L +  + + +Y+  I  F
Sbjct: 637 LARFSSYVYHISKGVPLLVRNVLLSIYENKIIYF 670


>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1405

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +3

Query: 432 YEDSDLEYRKSSESKPRCSSQNVLIGP 512
           Y D D E  K S  + R  S+NVL  P
Sbjct: 83  YSDEDDENEKGSSGRKRKKSKNVLAEP 109


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,514,971
Number of Sequences: 5004
Number of extensions: 46839
Number of successful extensions: 134
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)