Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_pT_C12
         (736 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC004818-1|AAH04818.1|  139|Homo sapiens chromosome 14 open read...    58   2e-08
AK000796-1|BAA91380.1|  139|Homo sapiens protein ( Homo sapiens ...    58   2e-08
AY040219-1|AAK76739.1| 1382|Homo sapiens ATP-binding cassette tr...    35   0.35 
AF411579-1|AAL99902.1| 1344|Homo sapiens ATP-binding cassette pr...    35   0.35 
AF367202-1|AAK58869.1| 1382|Homo sapiens ATP-binding cassette pr...    35   0.35 
AF352582-1|AAK19755.1| 1382|Homo sapiens ATP-binding cassette tr...    34   0.61 
DQ165820-1|ABA71598.1|  127|Homo sapiens immunoglobulin lambda c...    30   9.9  

>BC004818-1|AAH04818.1|  139|Homo sapiens chromosome 14 open reading
           frame 129 protein.
          Length = 139

 Score = 58.4 bits (135), Expect = 2e-08
 Identities = 28/66 (42%), Positives = 43/66 (65%), Gaps = 1/66 (1%)
 Frame = -2

Query: 729 YINLTTLEDHTYCIEMSAAGFRVVGRKYDDVSLTGHVNY-ETPYALLNNISQKYKESFGD 553
           YIN+ T E + YC+E++ AG +VVG  +D V       Y ET Y+LL+ +S  Y+E+FG+
Sbjct: 65  YINVETKERNRYCLELTEAGLKVVGYAFDQVDDHLQTPYHETVYSLLDTLSPAYREAFGN 124

Query: 552 ELMTKL 535
            L+ +L
Sbjct: 125 ALLQRL 130


>AK000796-1|BAA91380.1|  139|Homo sapiens protein ( Homo sapiens
           cDNA FLJ20789 fis, clone COL01731. ).
          Length = 139

 Score = 58.4 bits (135), Expect = 2e-08
 Identities = 28/66 (42%), Positives = 43/66 (65%), Gaps = 1/66 (1%)
 Frame = -2

Query: 729 YINLTTLEDHTYCIEMSAAGFRVVGRKYDDVSLTGHVNY-ETPYALLNNISQKYKESFGD 553
           YIN+ T E + YC+E++ AG +VVG  +D V       Y ET Y+LL+ +S  Y+E+FG+
Sbjct: 65  YINVETKERNRYCLELTEAGLKVVGYAFDQVDDHLQTPYHETVYSLLDTLSPAYREAFGN 124

Query: 552 ELMTKL 535
            L+ +L
Sbjct: 125 ALLQRL 130


>AY040219-1|AAK76739.1| 1382|Homo sapiens ATP-binding cassette
            transporter sub-family C member 11 protein.
          Length = 1382

 Score = 34.7 bits (76), Expect = 0.35
 Identities = 12/42 (28%), Positives = 28/42 (66%)
 Frame = +3

Query: 21   IIFVISRFXSFVLHLSGAVVLTIYFLYIQLYKRIINLFRALD 146
            ++ ++S    ++L L GA+++ I F+Y  ++K+ I +F+ L+
Sbjct: 951  VLLIVSVLSPYIL-LMGAIIMVICFIYYMMFKKAIGVFKRLE 991


>AF411579-1|AAL99902.1| 1344|Homo sapiens ATP-binding cassette protein
            C11 isoform A protein.
          Length = 1344

 Score = 34.7 bits (76), Expect = 0.35
 Identities = 12/42 (28%), Positives = 28/42 (66%)
 Frame = +3

Query: 21   IIFVISRFXSFVLHLSGAVVLTIYFLYIQLYKRIINLFRALD 146
            ++ ++S    ++L L GA+++ I F+Y  ++K+ I +F+ L+
Sbjct: 951  VLLIVSVLSPYIL-LMGAIIMVICFIYYMMFKKAIGVFKRLE 991


>AF367202-1|AAK58869.1| 1382|Homo sapiens ATP-binding cassette protein
            C11 protein.
          Length = 1382

 Score = 34.7 bits (76), Expect = 0.35
 Identities = 12/42 (28%), Positives = 28/42 (66%)
 Frame = +3

Query: 21   IIFVISRFXSFVLHLSGAVVLTIYFLYIQLYKRIINLFRALD 146
            ++ ++S    ++L L GA+++ I F+Y  ++K+ I +F+ L+
Sbjct: 951  VLLIVSVLSPYIL-LMGAIIMVICFIYYMMFKKAIGVFKRLE 991


>AF352582-1|AAK19755.1| 1382|Homo sapiens ATP-binding cassette
            transporter MRP8 protein.
          Length = 1382

 Score = 33.9 bits (74), Expect = 0.61
 Identities = 12/42 (28%), Positives = 27/42 (64%)
 Frame = +3

Query: 21   IIFVISRFXSFVLHLSGAVVLTIYFLYIQLYKRIINLFRALD 146
            ++ ++S    ++L L GA+++ I F+Y  ++K  I +F+ L+
Sbjct: 951  VLLIVSVLSPYIL-LMGAIIMVICFIYYMMFKEAIGVFKRLE 991


>DQ165820-1|ABA71598.1|  127|Homo sapiens immunoglobulin lambda
           chain variable region protein.
          Length = 127

 Score = 29.9 bits (64), Expect = 9.9
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = +2

Query: 479 TLFVPECTHRPSGAPARCNSLVISSSPNDSL 571
           T  + E THRPSG P R +  + SSS + SL
Sbjct: 46  TTVIYEDTHRPSGVPDRFSGSIDSSSNSASL 76


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,237,294
Number of Sequences: 237096
Number of extensions: 1600064
Number of successful extensions: 7974
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7891
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7972
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8735159784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)