Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P15_pT_C12
(736 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U28940-5|AAA68351.1| 156|Caenorhabditis elegans Hypothetical pr... 55 5e-08
AL032623-4|CAA21510.1| 244|Caenorhabditis elegans Hypothetical ... 43 2e-04
AL032623-3|CAA21509.1| 317|Caenorhabditis elegans Hypothetical ... 43 2e-04
Z27080-5|CAA81605.1| 1247|Caenorhabditis elegans Hypothetical pr... 31 1.1
Z22176-14|CAA80143.1| 1247|Caenorhabditis elegans Hypothetical p... 31 1.1
AF101078-1|AAC72406.1| 1247|Caenorhabditis elegans CLU-1 protein. 31 1.1
U67954-8|AAB52608.2| 782|Caenorhabditis elegans Sulfate permeas... 29 3.4
AY954524-1|AAX34432.2| 762|Caenorhabditis elegans anion transpo... 29 3.4
AY887909-1|AAX34421.1| 782|Caenorhabditis elegans anion transpo... 29 3.4
Z50016-6|CAC42350.1| 448|Caenorhabditis elegans Hypothetical pr... 28 7.9
AF151644-1|AAD42386.1| 448|Caenorhabditis elegans ionotropic GA... 28 7.9
>U28940-5|AAA68351.1| 156|Caenorhabditis elegans Hypothetical
protein T24H7.3 protein.
Length = 156
Score = 55.2 bits (127), Expect = 5e-08
Identities = 29/74 (39%), Positives = 48/74 (64%), Gaps = 6/74 (8%)
Frame = -2
Query: 729 YINLTTLEDHTYCIEMSAAGFRVVGRKYDDVS-----LTGHVNY-ETPYALLNNISQKYK 568
+IN+TT E+HT+CIE++ G+RV + D ++ L H Y E+ + LL +IS ++
Sbjct: 74 FINVTTFENHTHCIELTQKGWRVASNRNDCMNGDFRQLDIHTKYFESLHTLLMDISPLFR 133
Query: 567 ESFGDELMTKLLHL 526
E+FG +L++KL L
Sbjct: 134 ETFGSKLISKLSEL 147
>AL032623-4|CAA21510.1| 244|Caenorhabditis elegans Hypothetical
protein Y43F8B.2b protein.
Length = 244
Score = 43.2 bits (97), Expect = 2e-04
Identities = 22/73 (30%), Positives = 42/73 (57%), Gaps = 8/73 (10%)
Frame = -2
Query: 729 YINLTTLEDHTYCIEMSAAGFRVVGRKYDDVSLTGHVN--------YETPYALLNNISQK 574
++N+TTLE YC+E++ G+R+ + D + G Y++ Y L+++IS
Sbjct: 115 FVNVTTLEAQPYCLELTLKGWRITSLRSD--CMVGDFTRLELFTKYYDSLYLLMDDISPG 172
Query: 573 YKESFGDELMTKL 535
Y+E F ++L+ +L
Sbjct: 173 YRERFSEKLVQRL 185
>AL032623-3|CAA21509.1| 317|Caenorhabditis elegans Hypothetical
protein Y43F8B.2a protein.
Length = 317
Score = 43.2 bits (97), Expect = 2e-04
Identities = 22/73 (30%), Positives = 42/73 (57%), Gaps = 8/73 (10%)
Frame = -2
Query: 729 YINLTTLEDHTYCIEMSAAGFRVVGRKYDDVSLTGHVN--------YETPYALLNNISQK 574
++N+TTLE YC+E++ G+R+ + D + G Y++ Y L+++IS
Sbjct: 188 FVNVTTLEAQPYCLELTLKGWRITSLRSD--CMVGDFTRLELFTKYYDSLYLLMDDISPG 245
Query: 573 YKESFGDELMTKL 535
Y+E F ++L+ +L
Sbjct: 246 YRERFSEKLVQRL 258
>Z27080-5|CAA81605.1| 1247|Caenorhabditis elegans Hypothetical
protein F55H2.6 protein.
Length = 1247
Score = 30.7 bits (66), Expect = 1.1
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Frame = -2
Query: 729 YINLTTLEDHTYCIEMSAAGFRV----VGRKYDDVSLTGHVNYETPYALLNNISQKYKES 562
YI++TT+E+ Y + GF V GR VS + Y++ LL N+S +K+
Sbjct: 232 YIDITTVENRIYHVTCCTRGFYVNNSQDGRFDPTVSNSNKTVYQSVIELLQNVSPGFKKV 291
Query: 561 F 559
+
Sbjct: 292 Y 292
>Z22176-14|CAA80143.1| 1247|Caenorhabditis elegans Hypothetical
protein F55H2.6 protein.
Length = 1247
Score = 30.7 bits (66), Expect = 1.1
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Frame = -2
Query: 729 YINLTTLEDHTYCIEMSAAGFRV----VGRKYDDVSLTGHVNYETPYALLNNISQKYKES 562
YI++TT+E+ Y + GF V GR VS + Y++ LL N+S +K+
Sbjct: 232 YIDITTVENRIYHVTCCTRGFYVNNSQDGRFDPTVSNSNKTVYQSVIELLQNVSPGFKKV 291
Query: 561 F 559
+
Sbjct: 292 Y 292
>AF101078-1|AAC72406.1| 1247|Caenorhabditis elegans CLU-1 protein.
Length = 1247
Score = 30.7 bits (66), Expect = 1.1
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Frame = -2
Query: 729 YINLTTLEDHTYCIEMSAAGFRV----VGRKYDDVSLTGHVNYETPYALLNNISQKYKES 562
YI++TT+E+ Y + GF V GR VS + Y++ LL N+S +K+
Sbjct: 232 YIDITTVENRIYHVTCCTRGFYVNNSQDGRFDPTVSNSNKTVYQSVIELLQNVSPGFKKV 291
Query: 561 F 559
+
Sbjct: 292 Y 292
>U67954-8|AAB52608.2| 782|Caenorhabditis elegans Sulfate permease
family protein 3 protein.
Length = 782
Score = 29.1 bits (62), Expect = 3.4
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = -2
Query: 723 NLTTLEDHTYCIEMSAAGFRVVGRKYDDVSLTGHVNYETPYALL 592
NL + T CI +S+ F V G++Y L NY P+ L+
Sbjct: 273 NLDNVHIPTVCISLSSFLFLVFGKEYLAPWLNSAFNYPVPFELV 316
>AY954524-1|AAX34432.2| 762|Caenorhabditis elegans anion
transporter SULP-3b protein.
Length = 762
Score = 29.1 bits (62), Expect = 3.4
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = -2
Query: 723 NLTTLEDHTYCIEMSAAGFRVVGRKYDDVSLTGHVNYETPYALL 592
NL + T CI +S+ F V G++Y L NY P+ L+
Sbjct: 273 NLDNVHIPTVCISLSSFLFLVFGKEYLAPWLNSAFNYPVPFELV 316
>AY887909-1|AAX34421.1| 782|Caenorhabditis elegans anion
transporter SULP-3a protein.
Length = 782
Score = 29.1 bits (62), Expect = 3.4
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = -2
Query: 723 NLTTLEDHTYCIEMSAAGFRVVGRKYDDVSLTGHVNYETPYALL 592
NL + T CI +S+ F V G++Y L NY P+ L+
Sbjct: 273 NLDNVHIPTVCISLSSFLFLVFGKEYLAPWLNSAFNYPVPFELV 316
>Z50016-6|CAC42350.1| 448|Caenorhabditis elegans Hypothetical
protein T21C12.1f protein.
Length = 448
Score = 27.9 bits (59), Expect = 7.9
Identities = 10/43 (23%), Positives = 22/43 (51%)
Frame = +3
Query: 363 CPEQLIVIPFTNIPNRYRVITMLYEDSDLEYRKSSESKPRCSS 491
CP L + P + + + + Y +++EY+ + +P CS+
Sbjct: 167 CPMDLKLFPMDSQHCKLEIESYAYSTAEIEYKWCTSKEPNCST 209
>AF151644-1|AAD42386.1| 448|Caenorhabditis elegans ionotropic GABA
receptor subunitUNC-49C protein.
Length = 448
Score = 27.9 bits (59), Expect = 7.9
Identities = 10/43 (23%), Positives = 22/43 (51%)
Frame = +3
Query: 363 CPEQLIVIPFTNIPNRYRVITMLYEDSDLEYRKSSESKPRCSS 491
CP L + P + + + + Y +++EY+ + +P CS+
Sbjct: 167 CPMDLKLFPMDSQHCKLEIESYAYSTAEIEYKWCTSKEPNCST 209
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,188,366
Number of Sequences: 27780
Number of extensions: 272428
Number of successful extensions: 846
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 816
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 846
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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