Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_pT_C06
         (325 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4H3U0 Cluster: CCAAT enhancer binding protein alpha/ga...    34   0.70 
UniRef50_A2TX99 Cluster: Putative LPS biosynthesis related flipp...    31   6.5  
UniRef50_Q98S62 Cluster: Putative uncharacterized protein orf341...    31   6.5  

>UniRef50_Q4H3U0 Cluster: CCAAT enhancer binding protein alpha/gamma
           homolog; n=1; Ciona intestinalis|Rep: CCAAT enhancer
           binding protein alpha/gamma homolog - Ciona intestinalis
           (Transparent sea squirt)
          Length = 312

 Score = 33.9 bits (74), Expect = 0.70
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = -3

Query: 179 CSSSLSNLIPSPMMYNHYNVSKVSPL--QSKLHFYFE 75
           C+S+ S+  PSP+ YN YN   V+P   QS  H  F+
Sbjct: 100 CASACSSAAPSPVPYNFYNTPPVTPQRPQSPHHLQFD 136


>UniRef50_A2TX99 Cluster: Putative LPS biosynthesis related
           flippase; n=1; Polaribacter dokdonensis MED152|Rep:
           Putative LPS biosynthesis related flippase -
           Polaribacter dokdonensis MED152
          Length = 478

 Score = 30.7 bits (66), Expect = 6.5
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +3

Query: 219 GKIILERTLNLRRQNNITCCNVIIDKIIEYLF 314
           G +++ +     + NNIT CN+II K I+Y F
Sbjct: 261 GIVLIPKITEFVKNNNITECNLIIVKSIKYTF 292


>UniRef50_Q98S62 Cluster: Putative uncharacterized protein orf341;
           n=1; Guillardia theta|Rep: Putative uncharacterized
           protein orf341 - Guillardia theta (Cryptomonas phi)
          Length = 341

 Score = 30.7 bits (66), Expect = 6.5
 Identities = 15/42 (35%), Positives = 25/42 (59%)
 Frame = -1

Query: 310 KYSIILSIITLQHVILFCRRKLSVLSNIIFPLNYLKIRWLQY 185
           K+ +++    L  ++   R   S+  NIIFPLN LKI +L++
Sbjct: 98  KFFLLIKKEILNSILESFRFSKSITKNIIFPLNSLKIIFLKF 139


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 287,548,150
Number of Sequences: 1657284
Number of extensions: 5117024
Number of successful extensions: 11382
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 11106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11382
length of database: 575,637,011
effective HSP length: 84
effective length of database: 436,425,155
effective search space used: 10037778565
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)