Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_pT_C06
         (325 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    25   2.8  
SPBC725.04 |||oxalyl-CoA decarboxylase |Schizosaccharomyces pomb...    25   2.8  
SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M...    25   2.8  
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    25   3.7  
SPBC21C3.02c |sds3||Sds3-like family protein|Schizosaccharomyces...    24   6.5  
SPAC6F6.05 |||oligosaccharyltransferase epsilon subunit |Schizos...    23   8.6  

>SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 416

 Score = 25.0 bits (52), Expect = 2.8
 Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
 Frame = -3

Query: 227 NFPT*LFKNPMVTVHTCSSSLSNLIPSPMMYNHYNVSKVSPLQSKLHFYFEEK*SNHLCY 48
           N PT ++   + T  T SSS   +IP+ +         V  L+  ++ Y      N  CY
Sbjct: 160 NNPTTVYSGTVATTETFSSSTVVVIPTAI------CDGVRGLEYAVYDYTISSSMNEFCY 213

Query: 47  -KDR*TLMFLFSE*VY 3
            K+  T +F F+E  Y
Sbjct: 214 PKNGQTDVFAFNEPAY 229


>SPBC725.04 |||oxalyl-CoA decarboxylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 574

 Score = 25.0 bits (52), Expect = 2.8
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 38  TYLCNKDDYFIFLQNKNGVYFGVD 109
           T + N+ D  + + N NGVY G+D
Sbjct: 459 TAIRNQLDLLVIVINNNGVYHGLD 482


>SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 416

 Score = 25.0 bits (52), Expect = 2.8
 Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
 Frame = -3

Query: 227 NFPT*LFKNPMVTVHTCSSSLSNLIPSPMMYNHYNVSKVSPLQSKLHFYFEEK*SNHLCY 48
           N PT ++   + T  T SSS   +IP+ +         V  L+  ++ Y      N  CY
Sbjct: 160 NNPTTVYSGTVATTETFSSSTVVVIPTAI------CDGVRGLEYAVYDYTISSSMNEFCY 213

Query: 47  -KDR*TLMFLFSE*VY 3
            K+  T +F F+E  Y
Sbjct: 214 PKNGQTDVFAFNEPAY 229


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
            Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 24.6 bits (51), Expect = 3.7
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -3

Query: 131  HYNVSKVSPLQSKLHFYFEEK*SNHLC 51
            ++  S++S LQ+K+H     + SNHLC
Sbjct: 1746 NFQNSELSRLQTKMHIPGVIELSNHLC 1772


>SPBC21C3.02c |sds3||Sds3-like family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 491

 Score = 23.8 bits (49), Expect = 6.5
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -3

Query: 167 LSNLIPSPMMYNHYNVSKVSPLQSKLHFYFEEK*SN 60
           L N    P M N  N++ VSP   +  F  EEK +N
Sbjct: 152 LVNNSVEPQMENTANITIVSPSLKESDFESEEKATN 187


>SPAC6F6.05 |||oligosaccharyltransferase epsilon subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 122

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 9/39 (23%), Positives = 23/39 (58%)
 Frame = +2

Query: 74  LQNKNGVYFGVD*LSTHYNDYTSLGLELS*IMMNYMYVL 190
           + +K+G++  +  + T YN+ T+L L+     + ++ V+
Sbjct: 1   MSSKSGLFLPLSSVITSYNENTNLSLKTIDAFLGFLVVV 39


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,297,464
Number of Sequences: 5004
Number of extensions: 24958
Number of successful extensions: 74
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 87815546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)