Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P15_pT_C03
(738 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 115 8e-27
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 91 2e-19
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 90 3e-19
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 85 8e-18
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 75 8e-15
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 67 3e-12
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 66 4e-12
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 66 7e-12
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 64 2e-11
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 64 2e-11
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 63 3e-11
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 63 5e-11
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 60 2e-10
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 59 7e-10
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 58 1e-09
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 57 2e-09
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 57 3e-09
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 57 3e-09
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 56 4e-09
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 54 2e-08
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 52 6e-08
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 48 1e-06
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 47 3e-06
SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom... 39 6e-04
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 38 0.001
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 38 0.001
SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase |Schizosa... 37 0.003
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 36 0.005
SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 30 0.30
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch... 30 0.30
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 29 0.91
SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1 |Schiz... 27 2.1
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|... 27 3.7
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc... 26 4.9
SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1 |Schiz... 26 6.4
SPCC4F11.04c |||mannosyltransferase complex subunit |Schizosacch... 26 6.4
SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr 2|||... 25 8.5
SPAC3C7.03c |rhp55||RecA family ATPase Rhp55|Schizosaccharomyces... 25 8.5
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 115 bits (276), Expect = 8e-27
Identities = 49/82 (59%), Positives = 68/82 (82%)
Frame = -2
Query: 734 IXVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFTPSNSRQA 555
I VATDVA+RG+DV GI +V N+D+P ++EDY+HRIGRTGR+ +KGT+Y +FT N++QA
Sbjct: 422 IMVATDVASRGIDVKGITHVFNYDFPGNTEDYVHRIGRTGRAGAKGTAYTYFTSDNAKQA 481
Query: 554 KDLVSVLQEANQMISPQLQSMA 489
++LVS+L EA Q I P+L+ MA
Sbjct: 482 RELVSILSEAKQDIDPKLEEMA 503
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 91.1 bits (216), Expect = 2e-19
Identities = 41/74 (55%), Positives = 56/74 (75%)
Frame = -2
Query: 734 IXVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFTPSNSRQA 555
+ VATDVAARGLD+ ++ VIN +P + EDY+HRIGRTGR+ +KGT+ FFTP + A
Sbjct: 469 VLVATDVAARGLDIPKVQLVINVTFPLTIEDYVHRIGRTGRANTKGTAITFFTPQDKSHA 528
Query: 554 KDLVSVLQEANQMI 513
+LV+VL++A Q I
Sbjct: 529 GELVNVLRQAKQDI 542
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 90.2 bits (214), Expect = 3e-19
Identities = 43/83 (51%), Positives = 58/83 (69%)
Frame = -2
Query: 737 SIXVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFTPSNSRQ 558
SI VAT VA+RGLD+ + +VIN+D P +DY+HRIGRTGR+ + G + AFF +N
Sbjct: 482 SIMVATAVASRGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGQAVAFFNRNNKGI 541
Query: 557 AKDLVSVLQEANQMISPQLQSMA 489
AK+L+ +LQEANQ L +MA
Sbjct: 542 AKELIELLQEANQECPSFLIAMA 564
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 85.4 bits (202), Expect = 8e-18
Identities = 35/84 (41%), Positives = 54/84 (64%)
Frame = -2
Query: 734 IXVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFTPSNSRQA 555
+ +AT V ARGLDV ++ V+N+D PN EDY+HR+GRTGR+ G + F TP + A
Sbjct: 721 VLIATSVVARGLDVKSLQLVVNYDCPNHMEDYVHRVGRTGRAGHTGVAVTFITPEQEKYA 780
Query: 554 KDLVSVLQEANQMISPQLQSMADR 483
D+ L+ + Q + +LQ++A +
Sbjct: 781 VDIAKALKMSKQPVPKELQTLASQ 804
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 75.4 bits (177), Expect = 8e-15
Identities = 32/70 (45%), Positives = 46/70 (65%)
Frame = -2
Query: 734 IXVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFTPSNSRQA 555
+ +ATD+ ARG+D G+K VINFD+P S YIHRIGRTGR+ + G + FFT +
Sbjct: 341 VLIATDLLARGIDFHGVKMVINFDFPQSVHSYIHRIGRTGRAGNTGQAVTFFTKEDGEYI 400
Query: 554 KDLVSVLQEA 525
K + V++ +
Sbjct: 401 KLIAGVMRSS 410
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 66.9 bits (156), Expect = 3e-12
Identities = 33/81 (40%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Frame = -2
Query: 734 IXVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFTPSNSRQA 555
I VATD+A RG+D+ + V+N++ S EDY HRIGRTGR+ GT+ F P ++
Sbjct: 569 ILVATDIAGRGIDIPNVSLVLNYNMAKSIEDYTHRIGRTGRAGKSGTAITFLGPEDTDVY 628
Query: 554 KDL-VSVLQEANQMISPQLQS 495
DL V + + A I +L++
Sbjct: 629 YDLRVLLSRSAKAHIPDELRN 649
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 66.5 bits (155), Expect = 4e-12
Identities = 29/53 (54%), Positives = 37/53 (69%)
Frame = -2
Query: 734 IXVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFT 576
I VATDVA+RGLD+ ++ VINFD P +DYIHR+GRT R+ G S + T
Sbjct: 311 ILVATDVASRGLDIPSVQLVINFDLPRDPDDYIHRVGRTARAGRSGESISIVT 363
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 65.7 bits (153), Expect = 7e-12
Identities = 29/71 (40%), Positives = 42/71 (59%)
Frame = -2
Query: 734 IXVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFTPSNSRQA 555
I VATDV RG+D++ + VIN+D P+S + Y+HR+GR GR +KG + F + Q
Sbjct: 348 ICVATDVFGRGIDIERVNIVINYDMPDSPDSYLHRVGRAGRFGTKGLAITFSSSEEDSQI 407
Query: 554 KDLVSVLQEAN 522
D + E N
Sbjct: 408 LDKIQERFEVN 418
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 64.1 bits (149), Expect = 2e-11
Identities = 29/63 (46%), Positives = 40/63 (63%)
Frame = -2
Query: 734 IXVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFTPSNSRQA 555
I + TD+ ARG+DV + VIN+D P + E+YIHRIGR GR KG S F T + R
Sbjct: 311 ILITTDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVSINFVTNDDVRMM 370
Query: 554 KDL 546
+++
Sbjct: 371 REI 373
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 64.1 bits (149), Expect = 2e-11
Identities = 28/63 (44%), Positives = 41/63 (65%)
Frame = -2
Query: 734 IXVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFTPSNSRQA 555
+ + TD+ ARG+DV + VIN+D P + E+YIHRIGR+GR KG + F T + R
Sbjct: 313 VLICTDIWARGIDVQQVSLVINYDLPANRENYIHRIGRSGRFGRKGVAINFVTNEDVRIL 372
Query: 554 KDL 546
+D+
Sbjct: 373 RDI 375
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 63.3 bits (147), Expect = 3e-11
Identities = 32/76 (42%), Positives = 44/76 (57%)
Frame = -2
Query: 734 IXVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFTPSNSRQA 555
I + TDVAARGLD+ + V+ +D P S++DY+HRIGRT R+ G + F P S
Sbjct: 499 ILLCTDVAARGLDLPNVDLVVQYDAPFSTDDYLHRIGRTARAGHNGAAIMFLLPKESEYI 558
Query: 554 KDLVSVLQEANQMISP 507
L S + AN + P
Sbjct: 559 NLLKSSV-SANILEQP 573
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 62.9 bits (146), Expect = 5e-11
Identities = 30/54 (55%), Positives = 36/54 (66%)
Frame = -2
Query: 737 SIXVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFT 576
S VATDVAARGLD+ + VIN+D P S+ YIHR+GRT R+ G S A T
Sbjct: 337 STLVATDVAARGLDIPLVDVVINYDIPTDSKAYIHRVGRTARAGRAGKSIALVT 390
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 60.5 bits (140), Expect = 2e-10
Identities = 26/56 (46%), Positives = 37/56 (66%), Gaps = 1/56 (1%)
Frame = -2
Query: 734 IXVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGR-SKSKGTSYAFFTPS 570
I + T+VAARGLD+ + +++ +D P+ DYIHR+GRT R +K G S F PS
Sbjct: 389 ILLCTNVAARGLDIPAVDWIVQYDPPDDPRDYIHRVGRTARGTKGTGKSLMFLAPS 444
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 58.8 bits (136), Expect = 7e-10
Identities = 22/51 (43%), Positives = 36/51 (70%)
Frame = -2
Query: 728 VATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFT 576
V +D+ RG+D+ + VINFD+P ++E Y+HRIGR+GR +G + +F +
Sbjct: 336 VCSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHRGLAISFIS 386
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 58.0 bits (134), Expect = 1e-09
Identities = 25/63 (39%), Positives = 38/63 (60%)
Frame = -2
Query: 734 IXVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFTPSNSRQA 555
+ V TDVAARG+D+ + +VI++ P++++ Y+HR GRT R+ G S P Q
Sbjct: 442 VLVCTDVAARGIDIPSVTHVIHYHVPHTADMYVHRSGRTARANEDGVSILMCGPKELSQL 501
Query: 554 KDL 546
K L
Sbjct: 502 KRL 504
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 57.2 bits (132), Expect = 2e-09
Identities = 23/48 (47%), Positives = 34/48 (70%)
Frame = -2
Query: 710 ARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFTPSN 567
ARGLD + + V+NFD P++++ YIHRIGRT R+ GT+ +F P +
Sbjct: 387 ARGLDFENVACVLNFDMPSNTKSYIHRIGRTARAGKPGTAMSFVVPKS 434
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 56.8 bits (131), Expect = 3e-09
Identities = 25/49 (51%), Positives = 33/49 (67%)
Frame = -2
Query: 734 IXVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSY 588
I ATDV ARG+D I V+ P++++DYIHRIGRTGR+ G +Y
Sbjct: 346 ILFATDVVARGMDFPNITQVVQITGPSNTDDYIHRIGRTGRAGKTGEAY 394
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 56.8 bits (131), Expect = 3e-09
Identities = 27/84 (32%), Positives = 48/84 (57%)
Frame = -2
Query: 737 SIXVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFTPSNSRQ 558
++ V TDVA+RG+D+ + VIN+D+P + ++HR+GRT R+ G +Y+ ++
Sbjct: 398 NLLVVTDVASRGIDIPLLANVINYDFPPQPKVFVHRVGRTARAGRTGWAYSLVRAEDAGY 457
Query: 557 AKDLVSVLQEANQMISPQLQSMAD 486
DL L S Q+++ +D
Sbjct: 458 LLDLQLFLNRPLVTSSKQVKTDSD 481
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 56.4 bits (130), Expect = 4e-09
Identities = 23/44 (52%), Positives = 34/44 (77%)
Frame = -2
Query: 728 VATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKG 597
+ATDVA+RG+D+ GI+ VIN++ P + E Y+HR+GRT R+ G
Sbjct: 559 LATDVASRGIDIKGIEVVINYEAPATHEVYLHRVGRTARAGRSG 602
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 54.0 bits (124), Expect = 2e-08
Identities = 25/65 (38%), Positives = 32/65 (49%)
Frame = -2
Query: 734 IXVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFTPSNSRQA 555
+ TD+ ARGLD + +VI D P + YIHR+GRT R G + PS
Sbjct: 338 VLFCTDIVARGLDFPAVDWVIQLDAPEDVDTYIHRVGRTARYNRSGNALLLLLPSEEAFL 397
Query: 554 KDLVS 540
K L S
Sbjct: 398 KRLES 402
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 52.4 bits (120), Expect = 6e-08
Identities = 25/69 (36%), Positives = 38/69 (55%)
Frame = -2
Query: 737 SIXVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFTPSNSRQ 558
++ V +D+ ARG+DV + VIN+D P S Y+HRIGRT R+ +G ++
Sbjct: 489 NLLVCSDLMARGIDVANTQNVINYDPPLSVRSYVHRIGRTARAGREGFAWTLVQSHEGHH 548
Query: 557 AKDLVSVLQ 531
LV L+
Sbjct: 549 FSKLVKQLR 557
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 48.4 bits (110), Expect = 1e-06
Identities = 19/67 (28%), Positives = 35/67 (52%)
Frame = -2
Query: 737 SIXVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFTPSNSRQ 558
++ TD+A+RGLD+ + +V+ D P + + HR GR GR+ G + +
Sbjct: 311 TVLFTTDIASRGLDIPNVDFVLQLDPPLDPKSFSHRCGRAGRAGRAGVAIVLLNDGREEE 370
Query: 557 AKDLVSV 537
++L+ V
Sbjct: 371 YEELLRV 377
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 46.8 bits (106), Expect = 3e-06
Identities = 24/57 (42%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Frame = -2
Query: 734 IXVATDVAARGLDVDGIKYVINFDYP------NSSEDYIHRIGRTGRSKSKGTSYAF 582
+ V T+V ARG+DV + V+N+D P + Y+HRIGRTGR G S F
Sbjct: 405 VLVTTNVIARGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINF 461
>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 834
Score = 39.1 bits (87), Expect = 6e-04
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Frame = -2
Query: 728 VATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFTPSNS----R 561
+AT + GLD+ + +I +D S + R+GRTGR K KG Y T
Sbjct: 497 IATSIGEEGLDIGEVDMIICYDASASPIRMLQRMGRTGR-KRKGYIYMLLTRGKEEAKWE 555
Query: 560 QAKDLVSVLQE 528
+AKD LQ+
Sbjct: 556 RAKDAYRTLQD 566
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 38.3 bits (85), Expect = 0.001
Identities = 17/57 (29%), Positives = 29/57 (50%)
Frame = -2
Query: 734 IXVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFTPSNS 564
I +AT G++ G++ V+++ P SS DY+ GR GR + F+ +S
Sbjct: 1474 IMIATKAFGLGINYMGVRLVVHYGLPASSMDYVQETGRAGRDGKYAIAALFYEKYDS 1530
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 38.3 bits (85), Expect = 0.001
Identities = 17/57 (29%), Positives = 29/57 (50%)
Frame = -2
Query: 734 IXVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFTPSNS 564
I +AT G++ G++ V+++ P SS DY+ GR GR + F+ +S
Sbjct: 1474 IMIATKAFGLGINYMGVRLVVHYGLPASSMDYVQETGRAGRDGKYAIAALFYEKYDS 1530
>SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 37.1 bits (82), Expect = 0.003
Identities = 18/42 (42%), Positives = 24/42 (57%)
Frame = -2
Query: 728 VATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKS 603
VAT + GLD+ +I +D +S I R+GRTGR KS
Sbjct: 536 VATSIGEEGLDIGDTDMIICYDASSSPIRTIQRMGRTGRKKS 577
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 36.3 bits (80), Expect = 0.005
Identities = 17/53 (32%), Positives = 25/53 (47%)
Frame = -2
Query: 734 IXVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFT 576
I VAT G+D +++VI+ +P S E Y GR GR F++
Sbjct: 796 IIVATIAFGMGVDKGDVRFVIHHSFPKSLEGYYQETGRAGRDGKPAHCIMFYS 848
>SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 30.3 bits (65), Expect = 0.30
Identities = 17/51 (33%), Positives = 25/51 (49%)
Frame = -2
Query: 659 PNSSEDYIHRIGRTGRSKSKGTSYAFFTPSNSRQAKDLVSVLQEANQMISP 507
P SS+ + I K + F PSNS KDL +V ++ N++ SP
Sbjct: 246 PLSSQQILPAISNNTSEKPDSNNCGFLLPSNSTSIKDLKNV-KKGNRLNSP 295
>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1374
Score = 30.3 bits (65), Expect = 0.30
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = -2
Query: 737 SIXVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSK 600
++ +AT VA G+DV VI F+ + Y+ GR SK
Sbjct: 425 NVLIATAVAEEGIDVPSCNLVIRFNICRTVTQYVQSRGRARAMASK 470
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 28.7 bits (61), Expect = 0.91
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = -2
Query: 728 VATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGR 612
+AT+ G+D+ + VI +P S + + GR GR
Sbjct: 615 IATNALELGIDIGSLDAVITIGFPYSLSNLRQQFGRAGR 653
>SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 440
Score = 27.5 bits (58), Expect = 2.1
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +3
Query: 279 HNIYLYYEDSPS*KCQQKSYLIVVKSFVTTAPPLATLA 392
H+IY+ S C + YL ++ + V TA PL+ +A
Sbjct: 330 HDIYIAGISSVHNVCPKGYYLAIISTIVETANPLSEIA 367
>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
Prp16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 26.6 bits (56), Expect = 3.7
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -2
Query: 734 IXVATDVAARGLDVDGIKYVINFDY 660
+ VAT++A L V GI YV++ Y
Sbjct: 761 VVVATNIAETSLTVHGISYVVDTGY 785
>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
Prp22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1168
Score = 26.2 bits (55), Expect = 4.9
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = -2
Query: 734 IXVATDVAARGLDVDGIKYVIN 669
+ +AT++A L +DGI YV++
Sbjct: 781 VVIATNIAETSLTIDGIYYVVD 802
>SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 255
Score = 25.8 bits (54), Expect = 6.4
Identities = 12/47 (25%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = -2
Query: 692 DGIKYVINFDYPNSS--EDYIHRIGRTGRSKSKGTSYAFFTPSNSRQ 558
DG K+V++ DYP+ + ++ H + + SK ++ + SN ++
Sbjct: 97 DGAKFVVSTDYPDPALIDNLEHNVKQYAEIASKISAVGYLWGSNIKE 143
>SPCC4F11.04c |||mannosyltransferase complex subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 345
Score = 25.8 bits (54), Expect = 6.4
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = -1
Query: 642 LHPSY-WENWTFKIKRNIICFLYPFKFP 562
LHP Y + WT ++ RN I YP+ P
Sbjct: 109 LHPDYEYILWTDEMSRNFIADNYPWFLP 136
>SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 565
Score = 25.4 bits (53), Expect = 8.5
Identities = 15/54 (27%), Positives = 21/54 (38%)
Frame = -2
Query: 734 IXVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFTP 573
+ VA RGL + I ++ + S Y H GR G G + F P
Sbjct: 474 VFVANPSEIRGLHLPSITHIFHLWSTFSGVAYQHIAGRLGAMGQTGKIFNFIIP 527
>SPAC3C7.03c |rhp55||RecA family ATPase Rhp55|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 350
Score = 25.4 bits (53), Expect = 8.5
Identities = 13/37 (35%), Positives = 16/37 (43%)
Frame = -2
Query: 701 LDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTS 591
L +D + I YP S EDY + R SK S
Sbjct: 146 LIIDNLSMPIQLAYPTSPEDYAYLRLRRNTSKKSSLS 182
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,762,835
Number of Sequences: 5004
Number of extensions: 53596
Number of successful extensions: 160
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -