Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_pT_C02
         (793 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    24   1.9  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    24   1.9  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   9.9  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +2

Query: 143  SNAVTISGQPVPVSHLNGIEQ 205
            S ++ +S QP P +H NGI Q
Sbjct: 1125 SQSLQVSWQPPPNTHSNGIIQ 1145



 Score = 22.6 bits (46), Expect = 4.3
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +1

Query: 589 QLVTSRPDDSTHIN*ARVNVHRPRQHQCWATXSAXRST 702
           Q VT   D  +H+N + V V    ++ C A   A + T
Sbjct: 472 QYVTVHGDVISHVNISHVMVEDGGEYSCMAENRAGKVT 509


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +2

Query: 143  SNAVTISGQPVPVSHLNGIEQ 205
            S ++ +S QP P +H NGI Q
Sbjct: 1121 SQSLQVSWQPPPNTHSNGIIQ 1141



 Score = 22.6 bits (46), Expect = 4.3
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +1

Query: 589 QLVTSRPDDSTHIN*ARVNVHRPRQHQCWATXSAXRST 702
           Q VT   D  +H+N + V V    ++ C A   A + T
Sbjct: 472 QYVTVHGDVISHVNISHVMVEDGGEYSCMAENRAGKVT 509


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = -2

Query: 645 IHPRSINVRAII 610
           +H R +NVRA++
Sbjct: 90  VHSRDVNVRAVV 101


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 216,214
Number of Sequences: 438
Number of extensions: 4486
Number of successful extensions: 14
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25003662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)