Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_pT_C01
         (853 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    26   0.33 
AY920544-1|AAX62142.1|  463|Tribolium castaneum cytochrome P450 ...    23   2.3  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    23   2.3  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    23   4.1  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   7.1  

>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 26.2 bits (55), Expect = 0.33
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -1

Query: 739 MTRHLKALIGPSILNADLSQLYEESQKLLDNGADYL 632
           MTR+L    G  +  + ++ L  E  K LDNG  +L
Sbjct: 591 MTRYLGDFEGNQVEGSPVTSLNREEIKRLDNGVGFL 626


>AY920544-1|AAX62142.1|  463|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 463

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +3

Query: 222 ISSNG*FSLKYCTLAI*FSINFWPPNP 302
           IS N   S+KY    +  S+  WPP P
Sbjct: 320 ISYNVLQSMKYLDQVVCESLRLWPPAP 346


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 12/50 (24%), Positives = 22/50 (44%)
 Frame = +2

Query: 404 VLSNFSAHFYYIFDRFYMKCVLIDSSISHWCYPLLWFLNHHVSFKKGIFY 553
           +L  F   F  I    ++ CV++ S    W + LL+     + +   +FY
Sbjct: 600 LLLMFGVSFLLITQTIFIICVIVQSEQIAWLH-LLYIFLVGIMYAADVFY 648



 Score = 22.2 bits (45), Expect = 5.4
 Identities = 9/40 (22%), Positives = 17/40 (42%)
 Frame = +2

Query: 374 RLYCNSYLHSVLSNFSAHFYYIFDRFYMKCVLIDSSISHW 493
           RL+   + H +L  F   F  +    +  CV++    + W
Sbjct: 866 RLFNEIFGHGLLLMFGISFLLVTQTIFALCVVLQLQENDW 905


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 7/32 (21%), Positives = 19/32 (59%)
 Frame = -1

Query: 508 EQWITPMADAGVNQYTFHIEPVKDVIEVCRKV 413
           + W    ++ G+N++ F ++ ++D+    RK+
Sbjct: 52  DPWFAGSSNVGINKWRFLLQCLEDLDRSLRKL 83


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +3

Query: 78   ASCTVLRSNFIVAAWSADPIMA 143
            A+CT L +  I  +W + P+ A
Sbjct: 1107 ATCTTLTAQTIRVSWVSPPLTA 1128


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,638
Number of Sequences: 336
Number of extensions: 3839
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23555563
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)