Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P15_pT_C01
(853 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0657 + 19271266-19271388,19271906-19271910,19272005-192720... 221 7e-58
03_01_0485 + 3695857-3695951,3696489-3696597,3696746-3696886,369... 155 4e-38
03_06_0302 - 32981404-32981538,32981619-32981678,32981800-329818... 36 0.031
07_01_0587 - 4362843-4362977,4363072-4363131,4363228-4363305,436... 36 0.041
07_01_0974 + 8211602-8212051 30 2.0
05_01_0030 + 195663-196691 29 6.2
03_02_0898 - 12246747-12246833,12247425-12247601,12248054-122481... 29 6.2
>09_04_0657 +
19271266-19271388,19271906-19271910,19272005-19272067,
19272150-19272256,19272321-19272418,19273070-19273162,
19273279-19273320,19273464-19273619
Length = 228
Score = 221 bits (539), Expect = 7e-58
Identities = 106/222 (47%), Positives = 154/222 (69%), Gaps = 4/222 (1%)
Frame = -1
Query: 721 ALIGPSILNADLSQLYEESQKLLDNGADYLHLDVMDGQFVPNLTFGHPVVKCLRGKIKDA 542
A I PS+L++D + L E+ +++ GAD+LH+D+MDG FVPNLT G PV++ LR K A
Sbjct: 7 AKIAPSMLSSDFANLAAEADRMVRLGADWLHMDIMDGHFVPNLTIGAPVIQSLRKHTK-A 65
Query: 541 FFETHMMVEKPEQWITPMADAGVNQYTFHIEPVKDVI-EVCRKVREHGMKVGVAIKPGTP 365
+ + H+MV P ++ P+A AG + +TFHIE +D E+ + ++ GM+ GV+++PGTP
Sbjct: 66 YLDCHLMVTNPSDYVEPLAKAGASGFTFHIEVSRDNWQELIQSIKAKGMRPGVSLRPGTP 125
Query: 364 VSEVEKYISIS---DMVLIMTVEPGFGGQKFMENQMAKVQYLRENYPLLDIEVDGGVGPS 194
V EV + ++VL+MTVEPGFGGQKFM M KV+ LR+ YP LDIEVDGG+GPS
Sbjct: 126 VEEVFPLVEAENPVELVLVMTVEPGFGGQKFMPEMMEKVRALRKKYPSLDIEVDGGLGPS 185
Query: 193 TINCCANAGANMIVSGTAIIGSADQAATIKLLRSTVQDANKQ 68
TI+ A+AGAN IV+G++I G+A+ I LR +V+ + +
Sbjct: 186 TIDVAASAGANCIVAGSSIFGAAEPGEVISALRKSVEGSQNK 227
>03_01_0485 +
3695857-3695951,3696489-3696597,3696746-3696886,
3696986-3697099,3697558-3697636,3698163-3698272,
3698344-3698400,3698520-3698609
Length = 264
Score = 155 bits (376), Expect = 4e-38
Identities = 82/207 (39%), Positives = 124/207 (59%), Gaps = 6/207 (2%)
Frame = -1
Query: 718 LIGPSILNADLSQLYEESQKLLDNGADYLHLDVMDGQFVPNLTFGHPVVKCLRGKIKDAF 539
++ PSIL+A+ S+L E+ + + G D++H+DVMDG+FVPN+T G VV LR + D
Sbjct: 52 IVSPSILSANFSKLGEQVKAVEVAGCDWIHVDVMDGRFVPNITIGPLVVDALR-PVTDLP 110
Query: 538 FETHMMVEKPEQWITPMADAGVNQYTFHIEPVKDVI--EVCRKVREHGMKVGVAIKPGTP 365
+ H+M+ +PEQ + AG + + H E + +++ G K GV + P TP
Sbjct: 111 LDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTVNQIKSLGAKAGVVLNPATP 170
Query: 364 VSEVEKYISISDMVLIMTVEPGFGGQKFMENQMAKVQYLR----ENYPLLDIEVDGGVGP 197
++ ++ + + D+VLIM+V PGFGGQ F+E+Q+ K+ LR E IEVDGGVGP
Sbjct: 171 LTAIDYVLDVVDLVLIMSVNPGFGGQSFIESQVKKIAELRRLCAEKGVNPWIEVDGGVGP 230
Query: 196 STINCCANAGANMIVSGTAIIGSADQA 116
AGAN IV+G+A+ G+ D A
Sbjct: 231 KNAYKVIEAGANAIVAGSAVFGAPDYA 257
>03_06_0302 -
32981404-32981538,32981619-32981678,32981800-32981877,
32982264-32982341,32982516-32982592,32983271-32983445,
32983532-32983678,32984407-32984496
Length = 279
Score = 36.3 bits (80), Expect = 0.031
Identities = 31/128 (24%), Positives = 60/128 (46%), Gaps = 4/128 (3%)
Frame = -1
Query: 481 AGVNQYTFHIEPVKDVIEVCRKVREHGMKVGVAIKPGTPVSEVEKYISISDMVLIMTVEP 302
AGV+ P+++ + + HG+++ + P TP +++ S+ + +
Sbjct: 134 AGVHGLVVPDLPLEETALLRNEAVMHGIELVLLTTPTTPTERMKEIAKASEGFIYLVSSV 193
Query: 301 GFGGQKFMENQMAKVQY-LRENYPLLDIEVDGGVGPST---INCCANAGANMIVSGTAII 134
G G + N +V+Y L+E + D V G G ST + A GA+ ++ G+AI+
Sbjct: 194 GVTGAR--SNVNLRVEYLLQEIKKVTDKPVAVGFGISTPEHVKQIAGWGADGVIIGSAIV 251
Query: 133 GSADQAAT 110
+AA+
Sbjct: 252 RQLGEAAS 259
>07_01_0587 -
4362843-4362977,4363072-4363131,4363228-4363305,
4363552-4363629,4363950-4364026,4364416-4364590,
4364698-4364844,4365477-4365716
Length = 329
Score = 35.9 bits (79), Expect = 0.041
Identities = 31/135 (22%), Positives = 64/135 (47%), Gaps = 4/135 (2%)
Frame = -1
Query: 502 WITPMADAGVNQYTFHIEPVKDVIEVCRKVREHGMKVGVAIKPGTPVSEVEKYISISDMV 323
++T + +AGV+ P+++ + + ++ +++ + P TP +EK S+
Sbjct: 177 FMTVVKEAGVHGLVVPDVPLEETNILRSEAAKNNLELVLLTTPTTPTERMEKITKASEGF 236
Query: 322 LIMTVEPGFGGQKFMENQMAKVQYLRENY-PLLDIEVDGGVGPST---INCCANAGANMI 155
+ + G G + N KVQ L ++ + D V G G ST + A GA+ +
Sbjct: 237 IYLVSTVGVTGAR--ANVSGKVQSLLQDIKQVTDKAVAVGFGISTPEHVKQIAGWGADGV 294
Query: 154 VSGTAIIGSADQAAT 110
+ G+A++ +AA+
Sbjct: 295 IIGSAMVRQLGEAAS 309
>07_01_0974 + 8211602-8212051
Length = 149
Score = 30.3 bits (65), Expect = 2.0
Identities = 14/43 (32%), Positives = 19/43 (44%)
Frame = +3
Query: 108 IVAAWSADPIMAVPETIMLAPALAQQFIVDGPTPPSTSISSNG 236
+ AA A ++ P P L QQF P PPS+ + G
Sbjct: 18 VAAAIVAGLLLLAPAAAQQPPPLVQQFYYYSPPPPSSPVGGGG 60
>05_01_0030 + 195663-196691
Length = 342
Score = 28.7 bits (61), Expect = 6.2
Identities = 19/54 (35%), Positives = 26/54 (48%)
Frame = +3
Query: 294 PNPGSTVIIKTMSDIEIYFSTSETGVPGFIATPTFIPCSLTFLHTSITSLTGSI 455
P P S + ++ + I ++ VP F+A T SLT L S SLTG I
Sbjct: 118 PIPDSLAALTDLTHLTISWTAVSGPVPSFLANLT----SLTMLDLSFNSLTGLI 167
>03_02_0898 -
12246747-12246833,12247425-12247601,12248054-12248176,
12248545-12248766,12249556-12249606,12249712-12249987
Length = 311
Score = 28.7 bits (61), Expect = 6.2
Identities = 16/77 (20%), Positives = 37/77 (48%)
Frame = -1
Query: 364 VSEVEKYISISDMVLIMTVEPGFGGQKFMENQMAKVQYLRENYPLLDIEVDGGVGPSTIN 185
+ E ++++ +L V GF G + N++ ++ L + LLD E+D G+ +
Sbjct: 188 IEEKVNALNMNAEILNRAVNEGFSGGERKRNEILQLSVLGADLALLD-EIDSGLDVDALE 246
Query: 184 CCANAGANMIVSGTAII 134
A A ++ ++++
Sbjct: 247 YVAKAVNGILTPNSSLM 263
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,532,925
Number of Sequences: 37544
Number of extensions: 387598
Number of successful extensions: 932
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 912
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 926
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2373961368
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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