Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P15_pT_B22
(658 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 248 5e-67
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 123 2e-29
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 111 9e-26
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 104 1e-23
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 95 6e-21
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 77 2e-15
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 74 2e-14
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 67 2e-12
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 44 3e-05
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 28 1.4
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 26 5.5
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha... 26 5.5
SPAC1B3.17 |clr2||chromatin silencing protein Clr2|Schizosacchar... 25 7.3
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc... 25 9.6
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 248 bits (607), Expect = 5e-67
Identities = 114/131 (87%), Positives = 121/131 (92%)
Frame = -2
Query: 657 GQVISIGNERFXCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYXNTVLSGGTT 478
GQVI+IGNERF PEALFQPS LG+E GIHE TYNSIMKCDVDIRKDLY N V+SGGTT
Sbjct: 245 GQVITIGNERFRAPEALFQPSALGLENAGIHEATYNSIMKCDVDIRKDLYGNVVMSGGTT 304
Query: 477 MYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDE 298
MYPGIADRMQKEI ALAPS+MK+KI+APPERKYSVWIGGSILASLSTFQQMWISKQEYDE
Sbjct: 305 MYPGIADRMQKEIQALAPSSMKVKIVAPPERKYSVWIGGSILASLSTFQQMWISKQEYDE 364
Query: 297 SGPSIVHRKCF 265
SGP IV+RKCF
Sbjct: 365 SGPGIVYRKCF 375
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 123 bits (297), Expect = 2e-29
Identities = 56/130 (43%), Positives = 86/130 (66%)
Frame = -2
Query: 654 QVISIGNERFXCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYXNTVLSGGTTM 475
Q I++G E F PE LF P +G EA G+H + SI+ D+D+R LY N VLSGG+T+
Sbjct: 251 QTITLGTECFSAPEVLFNPEMMGSEASGLHIQLFKSILLSDIDLRSTLYSNIVLSGGSTL 310
Query: 474 YPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDES 295
G +R E+ A++ ++KI A PER ++ W+GGSILASLSTF+++ I+ +EY ++
Sbjct: 311 LRGFGERFISELRAISGKKNQVKIYASPERMHNAWLGGSILASLSTFRRLLITSEEY-KN 369
Query: 294 GPSIVHRKCF 265
+++ R+ F
Sbjct: 370 DQNVIFRRRF 379
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 111 bits (267), Expect = 9e-26
Identities = 58/134 (43%), Positives = 86/134 (64%), Gaps = 12/134 (8%)
Frame = -2
Query: 657 GQVISIGNERFXCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYXNTVLSGGTT 478
G+VI +G+ER+ CPE LFQP +G E G+ E +++I DVDIRK LY VLSGG++
Sbjct: 245 GRVIKVGSERYECPECLFQPHLVGSEQPGLSEFIFDTIQAADVDIRKYLYRAIVLSGGSS 304
Query: 477 MYPGIADRMQKEITAL--------APSTM---KIKIIAPPERKYSVWIGGSILAS-LSTF 334
MY G+ R++KEI L P+ + K+KI P R+++V+IGG++LA ++
Sbjct: 305 MYAGLPSRLEKEIKQLWFERVLHGDPARLPNFKVKIEDAPRRRHAVFIGGAVLADIMAQN 364
Query: 333 QQMWISKQEYDESG 292
MW+SK E++E G
Sbjct: 365 DHMWVSKAEWEEYG 378
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 104 bits (249), Expect = 1e-23
Identities = 55/133 (41%), Positives = 74/133 (55%), Gaps = 11/133 (8%)
Frame = -2
Query: 657 GQVISIGNERFXCPEALFQPSFLGMEAC---------GIHETTYNSIMKCDVDIRKDLYX 505
G G ERF E LF PSF + G+HE Y SI+ CD ++R L
Sbjct: 286 GVTHKFGQERFRISEILFNPSFSASRSAETTPPQGSVGLHELVYQSILACDSELRSPLLN 345
Query: 504 NTVLSGGTTMYPGIADRMQKEITALAP-STMKIKII-APPERKYSVWIGGSILASLSTFQ 331
N V++GGT++ PG+++R+Q E+ LA S + + +VW GGSILASL FQ
Sbjct: 346 NIVVTGGTSLIPGLSERLQAEVQRLATGSRINVHTAETASATSNAVWFGGSILASLDNFQ 405
Query: 330 QMWISKQEYDESG 292
+W+SKQEYDE G
Sbjct: 406 HLWVSKQEYDEVG 418
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 95.5 bits (227), Expect = 6e-21
Identities = 47/108 (43%), Positives = 71/108 (65%), Gaps = 6/108 (5%)
Frame = -2
Query: 573 GIHETTYNSIMKCDVDIRKDLYXNTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAP 394
GI + N I +CDVDIR L N ++ GGT++ G + R+Q E++ L P + ++KI A
Sbjct: 326 GIPQLFQNCISECDVDIRASLLNNVIVCGGTSLMQGFSLRLQNELSKLYPGS-RLKIHAS 384
Query: 393 P---ERKYSVWIGGSILASLSTFQQMWISKQEYDESGP---SIVHRKC 268
ER Y+ W+GGSIL+SL TF Q+WIS+QEY+E G +++ ++C
Sbjct: 385 GHVVERSYASWLGGSILSSLGTFHQLWISRQEYEEHGSDRLALIEKRC 432
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 77.4 bits (182), Expect = 2e-15
Identities = 42/128 (32%), Positives = 65/128 (50%)
Frame = -2
Query: 654 QVISIGNERFXCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYXNTVLSGGTTM 475
QV+++ NERF PE LF PS + + GI E S+ +I+ L N V GG
Sbjct: 272 QVLNLSNERFMIPELLFSPSDIEIREAGIPEAVMQSVTHFPENIQAMLLENVVTIGGNCK 331
Query: 474 YPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDES 295
+PG R+ E+ +LAP+ ++K+ P + W S + L + I++ EY E
Sbjct: 332 FPGFHKRLSSELRSLAPANWEVKVFEPSDPICFPWKKASHM-PLEHWNANKITRSEYSEH 390
Query: 294 GPSIVHRK 271
G +I+ RK
Sbjct: 391 GANIMTRK 398
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 73.7 bits (173), Expect = 2e-14
Identities = 41/140 (29%), Positives = 67/140 (47%), Gaps = 15/140 (10%)
Frame = -2
Query: 648 ISIGNERFXCPEALFQPSFLGME-ACGIHETTYNSIMKCDVDIRKDLYXNTVLSGGTTMY 472
I +G ERF PE F P + + E N + +D+RK LY N VLSGG+T++
Sbjct: 280 IDVGFERFLAPEIFFNPEIASSDFLTPLPELVDNVVQSSPIDVRKGLYKNIVLSGGSTLF 339
Query: 471 PGIADRMQKEITALAPST--------------MKIKIIAPPERKYSVWIGGSILASLSTF 334
+R+Q+++ + + + +I+ ++ +VW GGS+LA F
Sbjct: 340 KNFGNRLQRDLKRIVDERIHRSEMLSGAKSGGVDVNVISHKRQRNAVWFGGSLLAQTPEF 399
Query: 333 QQMWISKQEYDESGPSIVHR 274
+K +Y+E G SI R
Sbjct: 400 GSYCHTKADYEEYGASIARR 419
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 66.9 bits (156), Expect = 2e-12
Identities = 30/118 (25%), Positives = 60/118 (50%)
Frame = -2
Query: 633 ERFXCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYXNTVLSGGTTMYPGIADR 454
E+ PE +F PS +G++ GI E + + + ++ ++ L N +++GG PG+ R
Sbjct: 594 EQIRVPEVIFSPSIVGIDQAGILEIMRSILQRHSLEEQQKLVSNVLITGGLGSLPGMETR 653
Query: 453 MQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIV 280
+++E+T++ P I + W G S + F+ ++++EY E GP +
Sbjct: 654 IKRELTSIMPVGSSINVFRASNPLLDAWKGASEWSVTEKFKAAKVTREEYLEKGPEYI 711
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 43.6 bits (98), Expect = 3e-05
Identities = 20/86 (23%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Frame = -2
Query: 519 KDLYXNTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPP---ERKYSVWIGGSILA 349
K+LY + ++ GG +PG A +++ I + + I +I PP + ++ W G I
Sbjct: 527 KNLYSSILIVGGAGQFPGFAHLLEERIHSKRANIPTISVIPPPRSMDAQFVAWKGACIYN 586
Query: 348 SLSTFQQMWISKQEYDESGPSIVHRK 271
+ ++WI ++ G ++ K
Sbjct: 587 RIRIVSELWIKNSDWKMLGSRVLQYK 612
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 27.9 bits (59), Expect = 1.4
Identities = 12/37 (32%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
Frame = -2
Query: 372 WIGGSILASLSTFQQM---WISKQEYDESGPSIVHRK 271
++GGSI+A S + + +++ +EY + GP+ +H K
Sbjct: 486 FLGGSIVAKTSFNESVSSHYVTLEEYAQHGPTAIHTK 522
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 25.8 bits (54), Expect = 5.5
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -3
Query: 380 TPYGSVDRSSPPSLPSNRCGSRNRSTTSLAPP 285
TP + PPS+PS+R R S ++ APP
Sbjct: 223 TPTSTSAPPIPPSIPSSRPPERVPSLSAPAPP 254
>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 617
Score = 25.8 bits (54), Expect = 5.5
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -2
Query: 447 KEITALAPSTMKIKIIAPPERKYSVWIGGSILASLST 337
KEI++ A S + + + P E+ W ILA L+T
Sbjct: 212 KEISSQARSNIALPTLRPQEKNLIDWRDRKILAPLTT 248
>SPAC1B3.17 |clr2||chromatin silencing protein
Clr2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 537
Score = 25.4 bits (53), Expect = 7.3
Identities = 17/62 (27%), Positives = 30/62 (48%)
Frame = -1
Query: 490 RWYHHVPWNRRPYAKGNHSSRPIDNED*DHCSSREEVLRMDRWIDPRLPLYLPTDVDLET 311
RWY PW + KG+ + +E + SSR + + W+D YL +++D+ +
Sbjct: 483 RWYE--PW----FVKGDLN---YTSEVKERTSSRLSAVGSENWVDDDFYEYLLSEIDMVS 533
Query: 310 GV 305
V
Sbjct: 534 AV 535
>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1284
Score = 25.0 bits (52), Expect = 9.6
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +1
Query: 313 FRDPHLLEGREGGEDRSTDPYGVLPLWRS 399
F HLL + G+D + + YG L W S
Sbjct: 797 FHQGHLLYLSDEGKDETLERYGTLSSWIS 825
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,616,211
Number of Sequences: 5004
Number of extensions: 51653
Number of successful extensions: 162
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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