Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_pT_B20
         (720 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    30   0.38 
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    28   1.2  
SPAC27F1.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    28   1.2  
SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl modifica...    26   4.7  
SPAPB24D3.01 ||SPAPB2C8.02|transcription factor |Schizosaccharom...    26   4.7  

>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 29.9 bits (64), Expect = 0.38
 Identities = 19/54 (35%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
 Frame = +1

Query: 37  LAFCNIYSFLYLLNILFIIHKSTFATVVHLILNTLLRLKVINRFVY--SKLLSL 192
           L+F   +SFL+ L+ +FI++ S+F  ++H +    L + V   F++  S LLSL
Sbjct: 127 LSFSFSFSFLFFLSQIFIVYFSSF-PILHFLFFFFLCVCVFLSFLFSLSHLLSL 179


>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 642

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +1

Query: 259 FFLWQHYLFFILAKGVPIVPIWSL 330
           F++W H L +I+ K +PI P+ SL
Sbjct: 327 FWVWCHSLLYIVPKTLPIKPLSSL 350


>SPAC27F1.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 101

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = +1

Query: 16  EECYYLHLA-FCNIYSFLYLLNILFIIHKSTFAT 114
           E+C   +++ F + + F Y++N  FIIH +TF T
Sbjct: 66  EKCEKYNISLFDSTFVFGYIVNCFFIIHLNTFLT 99


>SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl
           modification enzyme|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 666

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +3

Query: 645 KLYIEKKKTIYXQGKGSCVKQLNC 716
           +L IE K T Y + +G+  KQLNC
Sbjct: 556 RLIIEGKYTYYIKRQGTQNKQLNC 579


>SPAPB24D3.01 ||SPAPB2C8.02|transcription factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 594

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +1

Query: 4   RELYEECYYLHLAFCNIYSFLYLLN 78
           + L+  C  ++L++CN   FL+ LN
Sbjct: 445 QRLFSACIEVYLSYCNTLIFLHRLN 469


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,718,462
Number of Sequences: 5004
Number of extensions: 56050
Number of successful extensions: 138
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)