Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_pT_B20
         (720 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_03_0175 + 11241151-11241157,11241253-11241425,11241619-112417...    31   0.92 
03_05_0564 - 25655095-25655106,25656089-25656541,25656886-256569...    28   8.6  

>11_03_0175 +
           11241151-11241157,11241253-11241425,11241619-11241702,
           11242895-11242936,11243407-11243517,11245384-11245575,
           11245776-11245859,11246162-11246259,11246670-11246859
          Length = 326

 Score = 31.1 bits (67), Expect = 0.92
 Identities = 14/51 (27%), Positives = 20/51 (39%)
 Frame = +1

Query: 262 FLWQHYLFFILAKGVPIVPIWSL*KCTCDFILFPRCCFLLCSLNTTIGLRK 414
           + W HY F +L       P W +        L    CFL   + + + LRK
Sbjct: 116 YFWTHYFFTVLGASYTF-PSWRMNNVPHTTFLLTHACFLFYHMTSNMSLRK 165


>03_05_0564 -
           25655095-25655106,25656089-25656541,25656886-25656962,
           25657058-25657149,25657447-25657553,25657662-25657747,
           25657861-25657977,25658205-25658288,25658400-25658479,
           25658958-25659132,25659455-25659521,25660175-25660236,
           25660369-25660450,25660890-25661312,25661514-25661610,
           25662055-25662095,25662673-25662837
          Length = 739

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
 Frame = +1

Query: 7   ELYEECYYLHLAFCNIYSFLYLLNILFIIHKSTFATVVHLILNTLLRLKV--INRFVYSK 180
           + +   + L+    +IY F Y     ++   +T A + HLIL    R +V  + RF+ S+
Sbjct: 537 QFFPRFFLLYFLVFHIYFFSYTYGFSYLAFSATAAFMQHLILYFWNRFEVPALQRFIRSR 596


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,389,581
Number of Sequences: 37544
Number of extensions: 280506
Number of successful extensions: 537
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 537
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)