Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_pT_B13
         (646 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0673 + 24183512-24183514,24183625-24183694,24184203-241842...    50   2e-06
05_07_0205 - 28402436-28402505,28402604-28402681,28402789-284029...    42   4e-04
06_03_0668 + 23301578-23301791,23302102-23302199,23302233-233023...    40   0.002
04_04_0495 - 25623562-25623775,25623902-25624004,25624129-256242...    28   5.5  

>01_05_0673 +
           24183512-24183514,24183625-24183694,24184203-24184259,
           24184348-24184465,24185044-24185133,24185209-24185388,
           24185474-24185551,24185642-24185711
          Length = 221

 Score = 49.6 bits (113), Expect = 2e-06
 Identities = 24/47 (51%), Positives = 29/47 (61%)
 Frame = -2

Query: 645 GDGNXEFVAMPALLPPEVTMDPQWQNQIEKDLQDAQNTALPEXDEDL 505
           GDGN  FV  PAL PP+VT+D   Q Q E +L  A    LP+ D+DL
Sbjct: 173 GDGNLHFVETPALAPPDVTIDLAAQQQHEAELAAAAAQPLPDDDDDL 219


>05_07_0205 -
           28402436-28402505,28402604-28402681,28402789-28402968,
           28403051-28403140,28403258-28403375,28403461-28403517,
           28404155-28404224,28404317-28404319
          Length = 221

 Score = 41.9 bits (94), Expect = 4e-04
 Identities = 22/47 (46%), Positives = 26/47 (55%)
 Frame = -2

Query: 645 GDGNXEFVAMPALLPPEVTMDPQWQNQIEKDLQDAQNTALPEXDEDL 505
           GD N  FV   AL PPEV +D   Q Q E +L  A    LP+ D+DL
Sbjct: 173 GDPNLHFVEAVALKPPEVPIDLAMQQQHEAELAAAAAQPLPDDDDDL 219


>06_03_0668 +
           23301578-23301791,23302102-23302199,23302233-23302301,
           23302674-23302961,23303045-23303208,23303344-23303599,
           23303706-23303816,23304109-23304195,23305916-23305985,
           23306093-23306149,23306309-23306426,23307314-23307403,
           23307492-23307671,23307816-23307893,23308016-23308088
          Length = 650

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 21/46 (45%), Positives = 27/46 (58%)
 Frame = -2

Query: 645 GDGNXEFVAMPALLPPEVTMDPQWQNQIEKDLQDAQNTALPEXDED 508
           GD N  FV   ALLP +VT+D   Q +IE ++  A    LP+ DED
Sbjct: 601 GDMNLRFVEELALLPADVTIDLIAQQKIETEIAAAAAMPLPDEDED 646


>04_04_0495 -
           25623562-25623775,25623902-25624004,25624129-25624231,
           25624353-25624562
          Length = 209

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 15/27 (55%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
 Frame = +1

Query: 148 NNSDQIGINTYWAINAK-CFYDNCNKN 225
           N  D IGIN Y AI AK C Y  C  N
Sbjct: 22  NKVDFIGINQYTAIYAKDCIYSPCALN 48


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,488,370
Number of Sequences: 37544
Number of extensions: 258328
Number of successful extensions: 476
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 471
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 476
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)