Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_pT_B09
         (609 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    27   2.8  
SPBC646.07c |||enoyl reductase|Schizosaccharomyces pombe|chr 2||...    27   2.8  
SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subuni...    27   2.8  
SPBC530.14c |dsk1||SR protein-specific kinase Dsk1|Schizosacchar...    26   5.0  
SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein L25|Schizosacch...    26   5.0  
SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein L25|S...    25   8.7  

>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1888

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = -3

Query: 139  IKFQVKFAMESFFLLFNDSFLYRHEKEI 56
            +K  +     SF + +NDSF+ +HE+++
Sbjct: 1382 LKRSLSTTFYSFLISYNDSFIKKHEEKV 1409


>SPBC646.07c |||enoyl reductase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 295

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 11/41 (26%), Positives = 24/41 (58%)
 Frame = -3

Query: 142 LIKFQVKFAMESFFLLFNDSFLYRHEKEICLNA*VVFIKML 20
           +I++     +  FF+L N  ++YR +  +CLN  + F+ ++
Sbjct: 88  MIEYLGPLVIHLFFIL-NYKWIYRKDYNLCLNQKIAFVLVM 127


>SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subunit
           Rad15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 772

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = -3

Query: 565 FFLFL*PFRGELKDALEIGRIL--TPTSFLMRIVNIRFTPRK 446
           F  FL  F   LK  +++  ++  TPTSFL  + +I F  +K
Sbjct: 328 FIAFLKRFVEYLKTRMKVLHVIAETPTSFLQHVKDITFIDKK 369


>SPBC530.14c |dsk1||SR protein-specific kinase
           Dsk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 544

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = -3

Query: 451 RKVRDGGQKELGKKSVI 401
           +K+R+G +K LGKK +I
Sbjct: 130 QKIREGDEKHLGKKHII 146


>SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein
           L25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 141

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 15/47 (31%), Positives = 26/47 (55%)
 Frame = +1

Query: 52  NIFLFHVYIKKNR*TTKKSFPLQTLLET*LILS*MRPNVQTKHRLRL 192
           N  +FHV++K N+ T K++      +E   I + +RPN   K  ++L
Sbjct: 79  NTLVFHVHLKANKFTIKEAVRKLYSVEPVKINTLIRPNGTKKAFVKL 125


>SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein
           L25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 141

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = +1

Query: 52  NIFLFHVYIKKNR*TTKKSFPLQTLLET*LILS*MRPNVQTKHRLRL 192
           N  +FHV++K N+ T K +      ++   I + +RPN   K  ++L
Sbjct: 79  NTLVFHVHLKANKFTIKNAVKKLYSVDAVKINTLIRPNGTKKAFVKL 125


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,207,773
Number of Sequences: 5004
Number of extensions: 41461
Number of successful extensions: 94
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)