Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_pT_B09
         (609 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0640 - 30558523-30559027,30559123-30559252,30559388-305598...    28   6.7  
03_05_0773 + 27612237-27612330,27612426-27612523,27612605-276127...    27   8.8  
01_06_0249 + 27868897-27871599                                         27   8.8  

>02_05_0640 -
           30558523-30559027,30559123-30559252,30559388-30559868,
           30560292-30560346,30560537-30560613,30561228-30561315,
           30561490-30561593,30562050-30562231,30562347-30563109,
           30563195-30563438,30564513-30564658,30565158-30565283,
           30565404-30565517,30565595-30565762,30566283-30566528,
           30566605-30566767,30566970-30567064,30567274-30567357,
           30567769-30568055,30568359-30568572,30568923-30569140,
           30569386-30569623,30570312-30571118,30571202-30571301,
           30571694-30571737,30571824-30571973
          Length = 1942

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 17/54 (31%), Positives = 25/54 (46%)
 Frame = +3

Query: 378 SCAIYLFSITLFFPSSFCPPSLTLRGVKRMLTIRIRKLVGVNILPISKASFSSP 539
           S AI + +   F PS+   P   +  +       I + +G N+ PI  A FSSP
Sbjct: 177 SSAIAVPNAPSFHPSNPTSPLSAMNTIGSPTQSGIDQPIGANVSPIKGAEFSSP 230


>03_05_0773 +
           27612237-27612330,27612426-27612523,27612605-27612781,
           27612869-27612969,27613079-27613154,27613255-27613314,
           27613412-27613596,27613669-27613807,27614229-27614315,
           27614939-27615127,27615243-27615461
          Length = 474

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +3

Query: 393 LFSITLFFPSSFCPPSLTLRGV 458
           L ++T +  ++FCPPS+  RGV
Sbjct: 315 LMAVTRYAGATFCPPSVFARGV 336


>01_06_0249 + 27868897-27871599
          Length = 900

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -3

Query: 274 KNTIANTYPLCIVFMSS 224
           KNTI+  YPLC +F+ S
Sbjct: 5   KNTISYAYPLCFIFILS 21


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,255,090
Number of Sequences: 37544
Number of extensions: 203760
Number of successful extensions: 330
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 325
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 330
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)