Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_pT_B09
         (609 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       23   1.8  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    21   9.4  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          21   9.4  
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    21   9.4  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +3

Query: 399 SITLFFPSSFCPPSLTLRGVKRMLTIRI 482
           S+ L   S++C P + +    R LTI+I
Sbjct: 262 SVDLVVTSTYCEPQVVIVSPTRELTIQI 289


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 6/20 (30%), Positives = 13/20 (65%)
 Frame = -3

Query: 532 LKDALEIGRILTPTSFLMRI 473
           L+DA++ G ++TP    + +
Sbjct: 350 LRDAIDSGNVITPQGVFLSL 369


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 9/34 (26%), Positives = 18/34 (52%)
 Frame = +2

Query: 365 IFREIMRNLPLLNHTLLPEFLLPPISNFARSEAY 466
           I + +  ++ L+N T LP+ +        R++AY
Sbjct: 273 ILKGLKTSIILMNGTTLPQIMWGTKETSTRTDAY 306


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 6/24 (25%), Positives = 15/24 (62%)
 Frame = +3

Query: 450 RGVKRMLTIRIRKLVGVNILPISK 521
           +G+   + + I    G+N+LP+++
Sbjct: 133 KGINNGIIVNINDASGLNLLPMNR 156


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,638
Number of Sequences: 438
Number of extensions: 2805
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17971191
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)