Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_pT_B08
         (404 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pomb...    29   0.27 
SPBC713.03 |||D-lactate dehydrogenase |Schizosaccharomyces pombe...    26   1.9  
SPAC1002.09c |dld1|dldh|dihydrolipoamide dehydrogenase Dld1|Schi...    26   2.6  
SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase s...    25   3.4  
SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 compon...    25   4.5  

>SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1073

 Score = 29.1 bits (62), Expect = 0.27
 Identities = 23/87 (26%), Positives = 39/87 (44%)
 Frame = -3

Query: 360 INWETKLNINFLICV*FKMSKVTFKITLTSDPKLPFKVLSVPEATPFTAVLKFAAEEFRV 181
           I++  K N    + +    + +T  +TLT +    FKV S P +T     L+  ++EF  
Sbjct: 615 ISYLRKSNRAVYVLISSNSTLLTVYVTLTLEGVPDFKVYSNPISTDLPLTLQSPSDEFST 674

Query: 180 DPATSAIITDDGIGINPQQTAGNVFLK 100
             A S  +   GI +  +Q   N  L+
Sbjct: 675 IYAWSDYLYIVGIDMETEQPTLNQILE 701


>SPBC713.03 |||D-lactate dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 526

 Score = 26.2 bits (55), Expect = 1.9
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = +2

Query: 254 NGSFGSDVSVILKVTFDILNYTQIKKFMFNFVSQFITNYKTEVIG 388
           +G +  DVS+ L V +D++N T+ +   FN +     +   +V+G
Sbjct: 396 SGVYKYDVSLPLPVLYDLVNDTKKRLIEFNLLDDTPEHPVIDVVG 440


>SPAC1002.09c |dld1|dldh|dihydrolipoamide dehydrogenase
           Dld1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 511

 Score = 25.8 bits (54), Expect = 2.6
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +3

Query: 66  GPLGSILILNRALGIHYRLSAEDLCRYRH 152
           GP+   LI    L + Y  SAED+ R  H
Sbjct: 459 GPMAGELIGEATLALEYGASAEDVARVCH 487


>SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase
           subunit Dps1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 25.4 bits (53), Expect = 3.4
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = +2

Query: 212 TAVNGVASGTLSTLNGSFGSDVSVILKVTFDILNYT 319
           + + G  S T++T  G +G  +    ++  D+L+YT
Sbjct: 241 STILGQCSPTVATAAGEYGRCIGTAFQLMDDVLDYT 276


>SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 component
           of oxoglutarate dehydrogenase complex
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +2

Query: 179 STLNSSAANFNTAVNGVASGTLSTLNGS-FGS 271
           +TL S A     A+  +ASGT +  NG  FGS
Sbjct: 348 ATLGSKARAGKLAIEDMASGTFTISNGGIFGS 379


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,623,464
Number of Sequences: 5004
Number of extensions: 30970
Number of successful extensions: 94
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 138190552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)