Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_pT_B07
         (392 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q98RL3 Cluster: Putative transcription factor subunit; ...    32   4.5  
UniRef50_O51697 Cluster: Putative uncharacterized protein BB0756...    31   7.9  

>UniRef50_Q98RL3 Cluster: Putative transcription factor subunit;
           n=1; Guillardia theta|Rep: Putative transcription factor
           subunit - Guillardia theta (Cryptomonas phi)
          Length = 330

 Score = 31.9 bits (69), Expect = 4.5
 Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
 Frame = -3

Query: 384 FGRPILKQKLKSREIVIVNIKSILDLLKKNGDF*LN*NLNCEILMILMVHLDID*NKLCI 205
           F R  LK K K++ I+  N  +I+D   K  DF    NLN  I+++ +  L  + N +  
Sbjct: 13  FNRDTLKDKKKTKNIMKDNYNTIIDPALKRSDFINYHNLNKNIILLKIFFLR-NSNVVQK 71

Query: 204 SL-KKKNLLKIE 172
           S+  +++LLKI+
Sbjct: 72  SINSRRSLLKIK 83


>UniRef50_O51697 Cluster: Putative uncharacterized protein BB0756;
           n=3; Borrelia burgdorferi group|Rep: Putative
           uncharacterized protein BB0756 - Borrelia burgdorferi
           (Lyme disease spirochete)
          Length = 355

 Score = 31.1 bits (67), Expect = 7.9
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +3

Query: 237 GP*VSLKFRNLNFNSIKNRHFSLINLKSTLY 329
           G  + L+ + LNF  I NRH SLI+LK   +
Sbjct: 211 GEIIILECKKLNFKEIYNRHISLIHLKGNKF 241


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 256,823,085
Number of Sequences: 1657284
Number of extensions: 3457075
Number of successful extensions: 7598
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 7449
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7597
length of database: 575,637,011
effective HSP length: 92
effective length of database: 423,166,883
effective search space used: 16080341554
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)