Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P15_pT_B06
(767 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein Hsp60... 167 2e-42
SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C... 56 4e-09
SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ... 42 1e-04
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu... 39 0.001
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 31 0.24
SPBC1685.07c |||amino acid transporter |Schizosaccharomyces pomb... 29 0.55
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po... 27 2.2
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom... 27 3.9
SPAC513.02 |||phosphoglycerate mutase family|Schizosaccharomyces... 27 3.9
SPAC1F5.03c |||FAD-dependent oxidoreductase |Schizosaccharomyces... 25 9.0
>SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein
Hsp60|Schizosaccharomyces pombe|chr 1|||Manual
Length = 582
Score = 167 bits (405), Expect = 2e-42
Identities = 83/162 (51%), Positives = 115/162 (70%), Gaps = 3/162 (1%)
Frame = -2
Query: 766 RLASGXAVLHVGGSSEVEVNEXKDRVNDALNATRAAVEEGIVPGGGSALLRCIPVLEQLK 587
+L+ G AV+ VGGSSEVEVNE KDR+ DALNA +AAV EG++PG G++ ++ L +
Sbjct: 403 KLSGGIAVIKVGGSSEVEVNEKKDRIVDALNAVKAAVSEGVLPGAGTSFVKASLRLGDIP 462
Query: 586 TVNSDQATGVEIVMKALRMPCMTIAKNAGIDGSVVVAKVEDL-GDEF--GYDALNNEYVN 416
T N DQ GVEIV KA+ P TI +NAG++G+++V K+++L G EF GYD + +V+
Sbjct: 463 TNNFDQKLGVEIVRKAITRPAQTILENAGLEGNLIVGKLKELYGKEFNIGYDIAKDRFVD 522
Query: 415 MIEKGIIDPTKVVRTALTDASGVASLLTTAEAVICEIPQEKE 290
+ E G++DP KVVRT L DASGVASL+ T E I + P+E +
Sbjct: 523 LNEIGVLDPLKVVRTGLVDASGVASLMGTTECAIVDAPEESK 564
>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
Cct2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 56.4 bits (130), Expect = 4e-09
Identities = 43/153 (28%), Positives = 71/153 (46%), Gaps = 6/153 (3%)
Frame = -2
Query: 730 GSSEVEVNEXKDRVNDALNATRAAVEEGIVP-GGGSALLRCIPVLEQLKTVN-SDQATGV 557
G++ ++E + ++DAL V E V GGG A + +E+ T +A V
Sbjct: 373 GATHQLLDESERAIHDALAVLSQTVAESRVTLGGGCAEMLMAKAVEEAATHEPGKKAVAV 432
Query: 556 EIVMKALRMPCMTIAKNAGIDGSVVVAKVE----DLGDEFGYDALNNEYVNMIEKGIIDP 389
KAL +A NAG D S +VA+++ D D G D E +M KGI++
Sbjct: 433 SAFAKALSQLPTILADNAGFDSSELVAQLKAAHYDGNDTMGLDMDEGEIADMRAKGILEA 492
Query: 388 TKVVRTALTDASGVASLLTTAEAVICEIPQEKE 290
K+ + ++ S A LL + ++ P+ +E
Sbjct: 493 LKLKQAVVSSGSEGAQLLLRVDTILKAAPRPRE 525
>SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit
Cct7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 558
Score = 41.5 bits (93), Expect = 1e-04
Identities = 33/156 (21%), Positives = 71/156 (45%), Gaps = 6/156 (3%)
Frame = -2
Query: 730 GSSEVEVNEXKDRVNDALNATRAAVEEGI-VPGGGSALLRCIPVLEQLK-TVNSDQATGV 557
G ++ + E + ++DA+ + A++ + V GGG+ + L T++ Q +
Sbjct: 381 GGADQFIAEVERSLHDAIMIVKHALKNNLVVAGGGACEMELSKYLRDYSLTISGKQQNFI 440
Query: 556 EIVMKALRMPCMTIAKNAGIDGSVVVAKV---EDLGDEF-GYDALNNEYVNMIEKGIIDP 389
++L + + NAG D + ++ K+ G+ + G D + N EK + +P
Sbjct: 441 AAFARSLEVIPRQLCDNAGFDSTNILNKLRMQHAKGEMWAGVDMDSEGVANNFEKFVWEP 500
Query: 388 TKVVRTALTDASGVASLLTTAEAVICEIPQEKEPNP 281
+ V A+ A+ A+L+ + + I P ++ P
Sbjct: 501 STVKSNAILSATEAATLILSVDETIKNEPSQQPQAP 536
>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
Cct5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 546
Score = 38.7 bits (86), Expect = 0.001
Identities = 34/134 (25%), Positives = 66/134 (49%), Gaps = 8/134 (5%)
Frame = -2
Query: 766 RLASGXAV-LHVGGSSEVEVNEXKDRVNDALNATRAAVEEG-IVPGGGSALLRC-IPVLE 596
+ A+ AV + V GS+++ V+E K ++DAL R + + +V GGG+A + C + V +
Sbjct: 378 KCANSRAVTVFVRGSNKMIVDEAKRALHDALCVVRNLIRDNRVVYGGGAAEISCSLAVTK 437
Query: 595 QLKTVNSDQATGVEIVMKALRMPCMTIAKNAGIDG-----SVVVAKVEDLGDEFGYDALN 431
+ + + + AL + +A+N+G+ +V V++ G D L
Sbjct: 438 EAEKIPGIDQYSMGAFADALDTIPLALAENSGLSSIEALTAVKARHVKENKAYLGIDCLQ 497
Query: 430 NEYVNMIEKGIIDP 389
+M ++ +IDP
Sbjct: 498 TGSNDMRKQFVIDP 511
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 30.7 bits (66), Expect = 0.24
Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Frame = +3
Query: 318 TASAVVS--SDATPLASVRAVRTTFVGSMMPFSIMF-TYSLLRASYPNSSPRSSTLATT 485
T+S++ S S +TPL S + S S + T SLL +S P+S+P SS +TT
Sbjct: 241 TSSSISSTVSSSTPLTSSNSTTAATSASATSSSAQYNTSSLLPSSTPSSTPLSSANSTT 299
>SPBC1685.07c |||amino acid transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 420
Score = 29.5 bits (63), Expect = 0.55
Identities = 18/65 (27%), Positives = 33/65 (50%)
Frame = +3
Query: 330 VVSSDATPLASVRAVRTTFVGSMMPFSIMFTYSLLRASYPNSSPRSSTLATTTEPSMPAF 509
++SS LA V + +TF+ ++P S+ + +S AS NSSP ++ + +
Sbjct: 343 LLSSLEMVLAFVGSTGSTFISFILPGSLYYFFSHKVASPGNSSPLQLRISRAFAAGLAIY 402
Query: 510 FAIVM 524
+VM
Sbjct: 403 GTVVM 407
>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2812
Score = 27.5 bits (58), Expect = 2.2
Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +2
Query: 14 IPLFALTAGKLSSLNHSHKPACL-LCSNIHXTKSFHSLHLQFN 139
IP+F A +L + N + + +C N+ +HSLH+ F+
Sbjct: 2301 IPVFYQLAARLMNENSKFQQSLTSICYNVGRNHPYHSLHVLFS 2343
>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1692
Score = 26.6 bits (56), Expect = 3.9
Identities = 14/45 (31%), Positives = 19/45 (42%)
Frame = +2
Query: 5 YFKIPLFALTAGKLSSLNHSHKPACLLCSNIHXTKSFHSLHLQFN 139
+ PL +L +LN SH + S I L+LQFN
Sbjct: 537 FVTFPLIITELSQLETLNFSHNLLSQISSKIGSLVKLKHLYLQFN 581
>SPAC513.02 |||phosphoglycerate mutase family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 216
Score = 26.6 bits (56), Expect = 3.9
Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Frame = +3
Query: 429 LLRASYPNSSPRSSTLATTTEPSMPAFFAIVMHGI-LRAFITISTP 563
+ +A Y S RS LA FA+V HG+ +R F I P
Sbjct: 134 IYKADYKTSIQRSRVLAEFFAKVPEKVFAVVTHGVDIRLFQKIQKP 179
>SPAC1F5.03c |||FAD-dependent oxidoreductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 382
Score = 25.4 bits (53), Expect = 9.0
Identities = 10/37 (27%), Positives = 18/37 (48%)
Frame = +2
Query: 431 VEGIIPKFISKVFHLGNNNRTINACIFCYCHAWHPQS 541
+E I P + V LGN + + +CHA + ++
Sbjct: 115 IEWIAPSIVENVTRLGNKKNSGQVHPYKFCHAIYEEA 151
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,794,734
Number of Sequences: 5004
Number of extensions: 53650
Number of successful extensions: 185
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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