Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_pT_B04
         (833 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.            22   6.1  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   8.0  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    22   8.0  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    22   8.0  

>AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.
          Length = 50

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = +2

Query: 80  NSNKLMDWLQNCRTRPARVEGPI 148
           N N++M W  +C  +P    G I
Sbjct: 16  NQNQMMIWALDCSIKPKDHNGSI 38


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 10/45 (22%), Positives = 19/45 (42%)
 Frame = -2

Query: 613  TEAQSSQEGSRPRSAHRQAPAQNSSSVQVREACRHTILRRQKETV 479
            + AQS  + ++    H Q     S+ +Q      H++L   +  V
Sbjct: 905  SSAQSLLQSNQQHFPHHQIQVSTSAGLQTIRLSGHSVLHSAQSVV 949


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 795 RFSSPLPXAPW 827
           RF  PLP  PW
Sbjct: 76  RFRKPLPIEPW 86


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 795 RFSSPLPXAPW 827
           RF  PLP  PW
Sbjct: 76  RFRKPLPIEPW 86


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,217
Number of Sequences: 438
Number of extensions: 2722
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26702940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)