Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P15_pT_A21
(635 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|ch... 28 1.3
SPAC27D7.10c |||But2 family protein|Schizosaccharomyces pombe|ch... 28 1.3
SPAC27D7.09c |||But2 family protein|Schizosaccharomyces pombe|ch... 28 1.3
SPCC126.07c |||human CTD-binding SR-like protein rA9 homolog|Sch... 27 1.7
SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl cis-... 26 4.0
SPCC285.10c |||SPRY domain protein|Schizosaccharomyces pombe|chr... 26 5.2
SPBC1778.03c |||NADH pyrophosphatase |Schizosaccharomyces pombe|... 25 6.9
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch... 25 6.9
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 25 9.1
SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 25 9.1
>SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 463
Score = 27.9 bits (59), Expect = 1.3
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = -1
Query: 155 GLRVVDASVMPTITSGNTYAPVV 87
G+R++D S P SGN Y+PVV
Sbjct: 316 GIRLID-STKPEANSGNVYSPVV 337
>SPAC27D7.10c |||But2 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 383
Score = 27.9 bits (59), Expect = 1.3
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = -1
Query: 155 GLRVVDASVMPTITSGNTYAPVV 87
G+R++D S P+ SGN Y+PVV
Sbjct: 236 GIRLID-SANPSSNSGNVYSPVV 257
>SPAC27D7.09c |||But2 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 383
Score = 27.9 bits (59), Expect = 1.3
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = -1
Query: 155 GLRVVDASVMPTITSGNTYAPVV 87
G+R++D S P+ SGN Y+PVV
Sbjct: 236 GIRLID-SANPSSNSGNVYSPVV 257
>SPCC126.07c |||human CTD-binding SR-like protein rA9
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 571
Score = 27.5 bits (58), Expect = 1.7
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +1
Query: 469 FREIFPLDSGCSSVISENTVSCPKPASDR 555
F EI +S SV +E T+S P+P+S R
Sbjct: 291 FDEILHANSSVHSVATEATISNPRPSSGR 319
>SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl
cis-trans isomerase Cyp7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 463
Score = 26.2 bits (55), Expect = 4.0
Identities = 21/92 (22%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
Frame = -1
Query: 587 MLMLSDDICIALSEAGLGQETVFSLITLLHPE-SRGKISLKSSNPEDPPIIYSGYFTNEN 411
+L D++ + + + L Q+T S + E S+ IS SS +G + +
Sbjct: 212 VLSFGDEVDMPIVKKPLRQKTPVSRSSDTTTELSKDLISSSSSIHSTYSSAQTGLTSAKV 271
Query: 410 DLDNFARYLENFNTVINSTHFKELKSQVVDLK 315
D +AR ++ +T +NS+ +++ ++ LK
Sbjct: 272 SSDEYARQVDTLDTKLNSSSKSKVQEEISRLK 303
>SPCC285.10c |||SPRY domain protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 382
Score = 25.8 bits (54), Expect = 5.2
Identities = 30/129 (23%), Positives = 55/129 (42%), Gaps = 10/129 (7%)
Frame = -1
Query: 566 ICIALSEAGLGQETVFSLITLLHPESRGKISLKSSNPE--DPPIIYSGYFTNE--NDLDN 399
I IAL+ + + S+I LL G+I LK++NP D + + + E + LD+
Sbjct: 26 IFIALAAVIVLLICLLSVILLLRYTRHGRILLKNTNPGELDDEALENEHIDEEGFSLLDD 85
Query: 398 FA--RYLE----NFNTVINSTHFKELKSQVVDLKVKQCRQWPFGSHEYWACYALNLASTQ 237
RYL+ N++ ++ + + ++ K W F ++ + CY N
Sbjct: 86 MGKERYLQAREFELNSMKSNVNTDAKLLDFLQVQEKGVLAWHFIPNQEYNCYVKNKTELS 145
Query: 236 YHTVGTCAM 210
+ C M
Sbjct: 146 FLGNEECCM 154
>SPBC1778.03c |||NADH pyrophosphatase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 376
Score = 25.4 bits (53), Expect = 6.9
Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Frame = -1
Query: 623 TASFLPVLMCSQMLMLSDDICIALSEAGLGQETVFSLITLLHPESRGKISLKSSNPED-P 447
T FLP + L++ DD + LS + + FS H + +I+ + S E P
Sbjct: 46 TTRFLPFCDLNPALLVKDDKLVTLSYPQISKYFTFS--PFEHTDK--QIAERFSKGESLP 101
Query: 446 PIIYSGYFTNENDLDNFARY 387
++Y G DN++++
Sbjct: 102 VLVYMGNEERNGPTDNWSQH 121
>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1133
Score = 25.4 bits (53), Expect = 6.9
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = -1
Query: 446 PIIYSGYFTNENDLDNFARYLENFNTVIN 360
P++ S N D+F +E FN++IN
Sbjct: 820 PVLLSNMTINSETFDDFEFSVEQFNSLIN 848
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 25.0 bits (52), Expect = 9.1
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = -1
Query: 506 LLHPESRGKIS--LKSSNPEDPPIIYSGYFTNENDLDNFARYLENFNTVIN 360
LL S G +S K+ N DP Y T +ND D F R+L++ +N
Sbjct: 1467 LLFLHSPGYLSDIAKTCN-NDPRFAYEICKTLDNDSDKFVRWLDDNAAEVN 1516
>SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 116
Score = 25.0 bits (52), Expect = 9.1
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Frame = -1
Query: 569 DICIALSEAGLG---QETVFSLITLLHPESRGKISLKSSN 459
D CI +S A +ET I +LHPES + KS++
Sbjct: 73 DRCIRVSPANFALSAEETAVPDIAMLHPESADFQTFKSTS 112
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,510,096
Number of Sequences: 5004
Number of extensions: 50212
Number of successful extensions: 153
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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