Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P15_pT_A21
(635 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0127 + 988066-988171,988259-988881,988986-989396,989463-99... 53 2e-07
10_08_0682 + 19858131-19858230,19858313-19858954,19859041-198600... 53 2e-07
02_05_0304 + 27721413-27721479,27721561-27722208,27722399-277233... 51 9e-07
04_04_0862 + 28843654-28844386,28844486-28844895,28844995-288455... 48 8e-06
09_03_0047 - 11867302-11867356,11867461-11868032,11868485-118688... 43 2e-04
06_03_0980 + 26520832-26520922,26521021-26521409,26521612-265219... 40 0.001
08_02_0598 - 19149218-19149524,19150325-19150896,19151374-191517... 40 0.002
02_04_0656 - 24769069-24770814,24771552-24771608,24773307-247735... 29 3.1
01_06_0116 - 26595570-26596607,26596964-26598353,26599386-265999... 29 3.1
05_02_0033 + 5847754-5847982,5848308-5848437,5849038-5849116,584... 28 5.4
11_04_0227 + 15094941-15095445,15095773-15095865,15096209-150963... 27 9.4
11_01_0550 + 4355857-4356051,4357287-4357355,4357429-4357561,435... 27 9.4
07_03_0919 - 22594980-22595111,22595398-22595427,22595522-225955... 27 9.4
>03_01_0127 +
988066-988171,988259-988881,988986-989396,989463-990037,
990137-990194
Length = 590
Score = 53.2 bits (122), Expect = 2e-07
Identities = 46/155 (29%), Positives = 68/155 (43%), Gaps = 8/155 (5%)
Frame = -1
Query: 521 FSLITLLHPESRGKISLKSSNPEDPPIIYSGYFTNENDLDNFARYLENFNTVINSTHFKE 342
F L +L P S G ++L+S++P+ P + YF + D++ R +E V+ S F
Sbjct: 416 FILEKILGPMSTGHVALRSADPDANPAVTFNYFRDPRDVERCVRGIETIERVVRSRAFAR 475
Query: 341 LK-SQVVDLKV----KQCRQWPFGSHEYWACYALNLASTQYHTVGTC--AMGDKHIG-VV 186
+ V ++ ++ P A L TV T G H+G VV
Sbjct: 476 FTYANVTAMEAAVLGRRAGHLPVNLLPRRATDTRPLQQYCRETVMTIWHYHGGCHVGAVV 535
Query: 185 DSRLRVHGVTGLRVVDASVMPTITSGNTYAPVVMI 81
D RV GV GLRVVD+S N A V+M+
Sbjct: 536 DQDYRVLGVRGLRVVDSSTFKYSPGTNPQATVMML 570
>10_08_0682 +
19858131-19858230,19858313-19858954,19859041-19860016,
19860105-19860147
Length = 586
Score = 52.8 bits (121), Expect = 2e-07
Identities = 43/156 (27%), Positives = 63/156 (40%), Gaps = 9/156 (5%)
Frame = -1
Query: 521 FSLITLLHPESRGKISLKSSNPEDPPIIYSGYFTNENDLDNFARYLENFNTVINSTHFKE 342
F L +L P S G + L++++P P + YF DL+ +E VI S F
Sbjct: 420 FILEKILGPVSSGHVELRTTDPRANPSVTFNYFREAEDLERCVHGIETIERVIQSRAFSN 479
Query: 341 LK--SQVVDLKVKQCRQWPFG-------SHEYWACYALNLASTQYHTVGTCAMGDKHIGV 189
+ V+ +P Y ++ T +H G C +G V
Sbjct: 480 FTYANASVESIFTDSANFPVNLLPRHVNDSRSPEQYCMDTVMTIWHYHGGCHVG----AV 535
Query: 188 VDSRLRVHGVTGLRVVDASVMPTITSGNTYAPVVMI 81
VD RV GV GLRV+D+S N A V+M+
Sbjct: 536 VDDDYRVFGVQGLRVIDSSTFKYSPGTNPQATVMML 571
>02_05_0304 +
27721413-27721479,27721561-27722208,27722399-27723371,
27724196-27724237,27724379-27724466,27724911-27725016,
27726499-27726614
Length = 679
Score = 50.8 bits (116), Expect = 9e-07
Identities = 42/157 (26%), Positives = 69/157 (43%), Gaps = 10/157 (6%)
Frame = -1
Query: 521 FSLITLLHPESRGKISLKSSNPEDPPIIYSGYFTNENDLDNFARYLENFNTVINSTHFKE 342
F L +L P+S G+++L++ +P+D P + YF++ +DL A + VI S F
Sbjct: 409 FILEKVLGPQSTGRLALRNLDPDDNPTVSFNYFSHPDDLRRCAAGIATIERVIRSRAFSR 468
Query: 341 L--KSQVVDLKVKQCRQWPF------GSHEYWAC--YALNLASTQYHTVGTCAMGDKHIG 192
+ + ++P G + A + + T +H G C +G
Sbjct: 469 FAYPNFAFPATINVTAEFPANLMRMRGGSDPRALEQFCRDTVMTIWHYHGGCQVG----R 524
Query: 191 VVDSRLRVHGVTGLRVVDASVMPTITSGNTYAPVVMI 81
VVD RV G+ LRV+D S N A V+M+
Sbjct: 525 VVDRDYRVLGIEALRVIDGSTFNASPGTNPQATVMML 561
>04_04_0862 +
28843654-28844386,28844486-28844895,28844995-28845560,
28845737-28845803
Length = 591
Score = 47.6 bits (108), Expect = 8e-06
Identities = 46/173 (26%), Positives = 69/173 (39%), Gaps = 9/173 (5%)
Frame = -1
Query: 521 FSLITLLHPESRGKISLKSSNPEDPPIIYSGYFTNENDLDNFARYLENFNTVINSTHFKE 342
F L +L P S G + L++ NP+D P + YF + DL + VI S F
Sbjct: 417 FILEKILGPLSTGHLELRNRNPDDNPSVTFNYFAHPEDLRRCVAGVSVIERVIRSEAFAN 476
Query: 341 LKSQV--VDLKVKQCRQWPFG---SHEYWAC----YALNLASTQYHTVGTCAMGDKHIGV 189
V+ + +P H+ + + + T +H G C + V
Sbjct: 477 FTYPYFSVETLLNMTAGFPVNLRPRHDNDSTSLEQFCKDTVMTIWHYHGGCQVN----RV 532
Query: 188 VDSRLRVHGVTGLRVVDASVMPTITSGNTYAPVVMIAEKAADMIKIDHGHLEN 30
VD+ RV GV LRV+D S N A V+M+ +KI + L N
Sbjct: 533 VDAEYRVIGVDALRVIDGSTFNASPGTNPQATVMMLGRYMG--VKIQNERLGN 583
>09_03_0047 -
11867302-11867356,11867461-11868032,11868485-11868873,
11869018-11869331,11871028-11871382,11872004-11872076
Length = 585
Score = 43.2 bits (97), Expect = 2e-04
Identities = 39/158 (24%), Positives = 71/158 (44%), Gaps = 11/158 (6%)
Frame = -1
Query: 497 PESRGKISLKSSNPEDPPIIYSGYFTNENDLDNFARYLENFNTVINSTHFKELKS----- 333
P S G ++L ++ + P + YF++ DL ++ ++ + F EL +
Sbjct: 421 PLSTGHLALIDTDVKKNPAVTFNYFSHPQDLTRCVYGIKTIERILKTNRFSELSANTDGH 480
Query: 332 ---QVVDLKVK-QCRQWPFGSHEYWAC--YALNLASTQYHTVGTCAMGDKHIGVVDSRLR 171
+V+++ V+ P +++ + + + T +H G C +G VVD + R
Sbjct: 481 SMERVLNMSVQANVNLIPKHTNDTESLEQFCRDTVITIWHYHGGCHVGK----VVDQQHR 536
Query: 170 VHGVTGLRVVDASVMPTITSGNTYAPVVMIAEKAADMI 57
V GV+G+RVVD S N A V+M+ MI
Sbjct: 537 VLGVSGVRVVDGSTFSRSPGTNPQATVMMMGRYFGVMI 574
>06_03_0980 +
26520832-26520922,26521021-26521409,26521612-26521927,
26522869-26523769,26524103-26524184
Length = 592
Score = 40.3 bits (90), Expect = 0.001
Identities = 42/164 (25%), Positives = 60/164 (36%), Gaps = 11/164 (6%)
Frame = -1
Query: 497 PESRGKISLKSSNPEDPPIIYSGYFTNENDLDNFARYLENFNTVINSTHFKELKSQV--- 327
P S G + L SSNP + P + Y + DL + V+ ST +S +
Sbjct: 419 PLSEGSLWLTSSNPLESPSVRFNYLSRREDLARCVTGMRRVAKVLESTTMDVFRSAMGSL 478
Query: 326 -VDLKVKQCRQWPFGSHEYWAC-------YALNLASTQYHTVGTCAMGDKHIGVVDSRLR 171
D + ++ R W + +T +H G C G VVD R
Sbjct: 479 SQDSRRREFRIVGAALPVDWRTNDTALGDFCQQTVATLWHYHGGCVAGS----VVDRDFR 534
Query: 170 VHGVTGLRVVDASVMPTITSGNTYAPVVMIAEKAADMIKIDHGH 39
V V LRVVD S N A ++M+ + ID H
Sbjct: 535 VFRVRALRVVDGSTFRETPGTNPQATIMMMGRYIGQKM-IDERH 577
>08_02_0598 -
19149218-19149524,19150325-19150896,19151374-19151762,
19151850-19152163,19152312-19152356,19153451-19153805,
19154361-19154430
Length = 683
Score = 39.5 bits (88), Expect = 0.002
Identities = 38/158 (24%), Positives = 66/158 (41%), Gaps = 11/158 (6%)
Frame = -1
Query: 521 FSLITLLHPESRGKISLKSSNPEDPPIIYSGYFTNENDLDNFARYLENFNTVINSTHFKE 342
F L + P S G + L ++ P + YF + DL ++ ++ + HF
Sbjct: 427 FILSKIDGPLSTGNLVLVDTDINSNPTVTFNYFQHPKDLSRCVYGIKTIERILKTNHFTN 486
Query: 341 LKSQ--------VVDLKVK-QCRQWPFGSHEYWAC--YALNLASTQYHTVGTCAMGDKHI 195
V+++ V P +++ + + + T +H G C +G
Sbjct: 487 FTLNGGGYPMEVVLNMSVTANINLIPKHTNDSTSMEQFCRDTVVTIWHYHGGCHVGK--- 543
Query: 194 GVVDSRLRVHGVTGLRVVDASVMPTITSGNTYAPVVMI 81
VVD + RV GV+GLRV+D S + N A V+M+
Sbjct: 544 -VVDQQYRVIGVSGLRVIDGSTLFRSPGTNPQATVMMM 580
>02_04_0656 -
24769069-24770814,24771552-24771608,24773307-24773582,
24773675-24773965
Length = 789
Score = 29.1 bits (62), Expect = 3.1
Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = -1
Query: 233 HTVGTCAMG-DKHIGVVDSRLRVHGVTGLRVVDASVMPTITSGNTYAPVVMIA 78
H +G+C MG G VD+R L V D SV+PT N + +A
Sbjct: 721 HHMGSCRMGATAGDGAVDARGESWEAERLYVCDGSVLPTAVGVNPMITIQSVA 773
>01_06_0116 -
26595570-26596607,26596964-26598353,26599386-26599923,
26600562-26601453
Length = 1285
Score = 29.1 bits (62), Expect = 3.1
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = -3
Query: 375 QHGHQQYTLQRIEVSSGRSKGEAMSAMALWKSRVLGLLCP*FSQHTVP 232
Q G +++ +R ++SSGR G A + W S V P QH VP
Sbjct: 664 QSGDRRFHQKRNDMSSGRGHGHAWNNPPSWPSPVANGFVP--MQHGVP 709
>05_02_0033 +
5847754-5847982,5848308-5848437,5849038-5849116,
5849194-5849251,5849732-5850795,5850899-5851003,
5851369-5851473
Length = 589
Score = 28.3 bits (60), Expect = 5.4
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +2
Query: 185 LPPLYVYRPWRKSLRYGTV 241
LPP Y+ + W + RYGT+
Sbjct: 375 LPPHYILKRWTQEARYGTI 393
>11_04_0227 +
15094941-15095445,15095773-15095865,15096209-15096308,
15096799-15096874,15099906-15100017,15100924-15101012,
15101137-15101223,15101623-15101678,15102114-15102462
Length = 488
Score = 27.5 bits (58), Expect = 9.4
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = +3
Query: 114 GYGWHNASIHHSKTCHTVNS*PRIYHPY 197
G G H A + +K C T R+ HPY
Sbjct: 396 GIGSHTAEVIDNKECDTAGGEGRMLHPY 423
>11_01_0550 +
4355857-4356051,4357287-4357355,4357429-4357561,
4358248-4358454,4358601-4358716,4358814-4358918,
4359008-4359180,4359273-4359363,4359682-4359831,
4359928-4360173
Length = 494
Score = 27.5 bits (58), Expect = 9.4
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = -1
Query: 383 ENFNTVINSTHFKELKSQVVDLKVKQ 306
E+ + ++NS HF+ L + + D KV Q
Sbjct: 295 EDLSRIVNSNHFRRLTNLIEDKKVAQ 320
>07_03_0919 -
22594980-22595111,22595398-22595427,22595522-22595587,
22596021-22596107,22596868-22596921,22597696-22597762,
22598099-22598215,22598536-22598637,22598784-22598902,
22598966-22599049,22599220-22599354,22599470-22599505,
22599581-22599700,22600557-22600645,22601507-22601596,
22601629-22601802,22602135-22602235,22602323-22602363,
22602872-22602883
Length = 551
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/22 (63%), Positives = 15/22 (68%), Gaps = 2/22 (9%)
Frame = -1
Query: 224 GTCAMGD--KHIGVVDSRLRVH 165
G CA GD K+IGVVDS VH
Sbjct: 443 GYCAQGDRTKNIGVVDSEYIVH 464
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,637,547
Number of Sequences: 37544
Number of extensions: 333589
Number of successful extensions: 835
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 835
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -