Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P15_pT_A21
(635 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC034502-1|AAH34502.1| 594|Homo sapiens choline dehydrogenase p... 87 5e-17
AJ272267-1|CAB75961.1| 482|Homo sapiens choline dehydrogenase p... 87 5e-17
U50939-1|AAC50477.1| 534|Homo sapiens amyloid precursor protein... 30 6.0
BC013301-1|AAH13301.1| 534|Homo sapiens amyloid beta precursor ... 30 6.0
BC000480-1|AAH00480.1| 534|Homo sapiens amyloid beta precursor ... 30 6.0
AY358647-1|AAQ89010.1| 515|Homo sapiens APRG372 protein. 30 6.0
AY197612-1|AAP35030.1| 534|Homo sapiens protooncogene protein 1... 30 6.0
AC004638-1|AAC23784.1| 534|Homo sapiens amyloid precursor prote... 30 6.0
>BC034502-1|AAH34502.1| 594|Homo sapiens choline dehydrogenase
protein.
Length = 594
Score = 87.0 bits (206), Expect = 5e-17
Identities = 55/149 (36%), Positives = 78/149 (52%), Gaps = 3/149 (2%)
Frame = -1
Query: 491 SRGKISLKSSNPEDPPIIYSGYFTNENDLDNFARYLENFNTVINSTHFKELKSQVVDLKV 312
S G + L+S+NP+D P+I Y + E D+ E+F + T + + +
Sbjct: 431 SVGWLKLRSANPQDHPVIQPNYLSTETDI-------EDFRLCVKLTREIFAQEALAPFRG 483
Query: 311 KQCRQWP-FGSHEYWACYALNLASTQYHTVGTCAMGDKH--IGVVDSRLRVHGVTGLRVV 141
K+ + S + + A + YH TC MG VVD + RV GV LRVV
Sbjct: 484 KELQPGSHIQSDKEIDAFVRAKADSAYHPSCTCKMGQPSDPTAVVDPQTRVLGVENLRVV 543
Query: 140 DASVMPTITSGNTYAPVVMIAEKAADMIK 54
DAS+MP++ SGN AP +MIAEKAAD+IK
Sbjct: 544 DASIMPSMVSGNLNAPTIMIAEKAADIIK 572
>AJ272267-1|CAB75961.1| 482|Homo sapiens choline dehydrogenase
protein.
Length = 482
Score = 87.0 bits (206), Expect = 5e-17
Identities = 55/149 (36%), Positives = 78/149 (52%), Gaps = 3/149 (2%)
Frame = -1
Query: 491 SRGKISLKSSNPEDPPIIYSGYFTNENDLDNFARYLENFNTVINSTHFKELKSQVVDLKV 312
S G + L+S+NP+D P+I Y + E D+ E+F + T + + +
Sbjct: 319 SVGWLKLRSANPQDHPVIQPNYLSTETDI-------EDFRLCVKLTREIFAQEALAPFRG 371
Query: 311 KQCRQWP-FGSHEYWACYALNLASTQYHTVGTCAMGDKH--IGVVDSRLRVHGVTGLRVV 141
K+ + S + + A + YH TC MG VVD + RV GV LRVV
Sbjct: 372 KELQPGSHIQSDKEIDAFVRAKADSAYHPSCTCKMGQPSDPTAVVDPQTRVLGVENLRVV 431
Query: 140 DASVMPTITSGNTYAPVVMIAEKAADMIK 54
DAS+MP++ SGN AP +MIAEKAAD+IK
Sbjct: 432 DASIMPSMVSGNLNAPTIMIAEKAADIIK 460
>U50939-1|AAC50477.1| 534|Homo sapiens amyloid precursor
protein-binding protein 1 protein.
Length = 534
Score = 30.3 bits (65), Expect = 6.0
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Frame = -1
Query: 500 HPESRGKISLKSSNPED-PPIIYSGYFTNEN----DLDNFARYLENFNTVINSTHFKELK 336
+ E+ G+I ED +I G NEN D +NF ++N NT +N+T ++
Sbjct: 226 YSETNGRIPKTYKEKEDFRDLIRQGILKNENGAPEDEENFEEAIKNVNTALNTT---QIP 282
Query: 335 SQVVDL 318
S + D+
Sbjct: 283 SSIEDI 288
>BC013301-1|AAH13301.1| 534|Homo sapiens amyloid beta precursor
protein binding protein 1 protein.
Length = 534
Score = 30.3 bits (65), Expect = 6.0
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Frame = -1
Query: 500 HPESRGKISLKSSNPED-PPIIYSGYFTNEN----DLDNFARYLENFNTVINSTHFKELK 336
+ E+ G+I ED +I G NEN D +NF ++N NT +N+T ++
Sbjct: 226 YSETNGRIPKTYKEKEDFRDLIRQGILKNENGAPEDEENFEEAIKNVNTALNTT---QIP 282
Query: 335 SQVVDL 318
S + D+
Sbjct: 283 SSIEDI 288
>BC000480-1|AAH00480.1| 534|Homo sapiens amyloid beta precursor
protein binding protein 1 protein.
Length = 534
Score = 30.3 bits (65), Expect = 6.0
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Frame = -1
Query: 500 HPESRGKISLKSSNPED-PPIIYSGYFTNEN----DLDNFARYLENFNTVINSTHFKELK 336
+ E+ G+I ED +I G NEN D +NF ++N NT +N+T ++
Sbjct: 226 YSETNGRIPKTYKEKEDFRDLIRQGILKNENGAPEDEENFEEAIKNVNTALNTT---QIP 282
Query: 335 SQVVDL 318
S + D+
Sbjct: 283 SSIEDI 288
>AY358647-1|AAQ89010.1| 515|Homo sapiens APRG372 protein.
Length = 515
Score = 30.3 bits (65), Expect = 6.0
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = -1
Query: 473 LKSSNPEDPPIIYSGYFTNENDLDNFARYLENFNTVIN 360
L S NP P +Y+ Y + L RY E++ ++IN
Sbjct: 250 LASHNPTKPIFLYTAYQAVHSPLQAPGRYFEHYRSIIN 287
>AY197612-1|AAP35030.1| 534|Homo sapiens protooncogene protein 1
protein.
Length = 534
Score = 30.3 bits (65), Expect = 6.0
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Frame = -1
Query: 500 HPESRGKISLKSSNPED-PPIIYSGYFTNEN----DLDNFARYLENFNTVINSTHFKELK 336
+ E+ G+I ED +I G NEN D +NF ++N NT +N+T ++
Sbjct: 226 YSETNGRIPKTYKEKEDFRDLIRQGILKNENGAPEDEENFEEAIKNVNTALNTT---QIP 282
Query: 335 SQVVDL 318
S + D+
Sbjct: 283 SSIEDI 288
>AC004638-1|AAC23784.1| 534|Homo sapiens amyloid precursor
protein-binding protein 1 (APP-B1) protein.
Length = 534
Score = 30.3 bits (65), Expect = 6.0
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Frame = -1
Query: 500 HPESRGKISLKSSNPED-PPIIYSGYFTNEN----DLDNFARYLENFNTVINSTHFKELK 336
+ E+ G+I ED +I G NEN D +NF ++N NT +N+T ++
Sbjct: 226 YSETNGRIPKTYKEKEDFRDLIRQGILKNENGAPEDEENFEEAIKNVNTALNTT---QIP 282
Query: 335 SQVVDL 318
S + D+
Sbjct: 283 SSIEDI 288
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,327,478
Number of Sequences: 237096
Number of extensions: 1786496
Number of successful extensions: 3631
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3494
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3629
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6972732040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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