Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_pT_A20
         (741 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein L9|Schizosacchar...   187   2e-48
SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein L9|Schizosaccha...   182   4e-47
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c...    29   0.53 
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac...    27   2.8  
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large...    27   3.7  
SPBC14C8.16c |bot1||mitochondrial ribosomal protein subunit S35 ...    26   4.9  
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    26   6.5  
SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   8.6  
SPAC19A8.03 |||phosphatidylinositol-3-phosphatase |Schizosacchar...    25   8.6  

>SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein
           L9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 189

 Score =  187 bits (455), Expect = 2e-48
 Identities = 92/173 (53%), Positives = 123/173 (71%)
 Frame = -3

Query: 553 KQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGS 374
           + I  ++ + IP+G++V +K+RLVTVKGPRGVLK+N + + ++++      +K   W GS
Sbjct: 3   RDIYKDETLTIPEGVSVDIKARLVTVKGPRGVLKQNLRRVDIELKKQG-NTIKFIVWHGS 61

Query: 373 KKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYI 194
           +K  A +RT  S + NMI GVT+GF+YKMR VYAHFPIN   TE  +++EIRNFLGE+  
Sbjct: 62  RKHNACIRTAYSIINNMIIGVTQGFRYKMRLVYAHFPININLTENGTVVEIRNFLGERIT 121

Query: 193 RRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNKDIEKVL 35
           R +K  PGVTV  S   KDE+IIEGNSLE+VS SAA I+Q   V+NKDI K L
Sbjct: 122 RVIKCLPGVTVSISSAVKDEIIIEGNSLENVSQSAANIKQICNVRNKDIRKFL 174


>SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein
           L9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 190

 Score =  182 bits (444), Expect = 4e-47
 Identities = 90/173 (52%), Positives = 121/173 (69%)
 Frame = -3

Query: 553 KQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGS 374
           + I  ++ + IP G+TV +K+R VTV GPRG LK+N +H+ ++++      +K   W GS
Sbjct: 3   RDIYKDETLTIPKGVTVDIKARNVTVTGPRGTLKQNLRHVDIEMKKQG-NTIKFIVWHGS 61

Query: 373 KKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYI 194
           +K  A +R+V S + NMI GVT+GF+YKMR VYAHFPIN   TE  +++EIRNFLGE+  
Sbjct: 62  RKHNACIRSVYSIINNMIIGVTQGFRYKMRLVYAHFPININLTENGTVVEIRNFLGERIT 121

Query: 193 RRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNKDIEKVL 35
           R +K  PGVTV  S   KDE+I+EGNSLE+VS SAA I+Q   V+NKDI K L
Sbjct: 122 RVIKCLPGVTVSISSAVKDEIILEGNSLENVSQSAANIKQICNVRNKDIRKFL 174


>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1717

 Score = 29.5 bits (63), Expect = 0.53
 Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
 Frame = -3

Query: 526  KIPDGLTVHVKSRLVTV---KGP-RGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELA 359
            K+PDG+ +   SRL      K P    L   F H +VD+ +    L + E WF       
Sbjct: 1564 KVPDGIFLKT-SRLPIFEANKAPYNAYLLDFFTHGSVDMLIEQNNLKQSEIWFVLNDFSL 1622

Query: 358  AVRTVCSHVENMIKGVT 308
             + T+CS + N++  VT
Sbjct: 1623 VLATICSCLGNLLNLVT 1639


>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
           Smc6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1140

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 11/29 (37%), Positives = 21/29 (72%)
 Frame = -3

Query: 157 NSPKQKDELIIEGNSLEDVSSSAALIQQS 71
           +SPK+K +L ++G  L+ +  + +LI+QS
Sbjct: 249 SSPKEKYQLFMKGIQLKQLEENYSLIEQS 277


>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
            subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1405

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 13/46 (28%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = -3

Query: 166  TVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKN-KDIEKVLG 32
            +V+N    K EL +EG  L+ V ++  ++   T+  +  +++ VLG
Sbjct: 1228 SVINQESGKIELFMEGTGLQAVMNTEGIVGTKTSTNHVMEMKDVLG 1273


>SPBC14C8.16c |bot1||mitochondrial ribosomal protein subunit S35
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 315

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 17/58 (29%), Positives = 25/58 (43%)
 Frame = +1

Query: 553 SCLGLKTRASMKHNLTDVYQIFRHFFSIYY*NISYNAFQVVKHNLKNNCGEFSLCRMR 726
           S LGLKT  ++  N T    + + FFS      +     + KH  KN   ++  C  R
Sbjct: 8   SQLGLKTAFNLSQNKTYTSAVKKQFFSTGAFLSNGGNIDLNKHTQKNIDSKYVACNSR 65


>SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1462

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 14/63 (22%), Positives = 35/63 (55%)
 Frame = -3

Query: 493  SRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELAAVRTVCSHVENMIKG 314
            S+L  +   + ++ RN + L++  ++VN     +E W G +   +AV T  + ++++ + 
Sbjct: 1111 SKLCNLLNDKNIVVRN-QSLSLFHQLVNKYPFLLESWIGLQLVQSAVNTNTADIDDLYRL 1169

Query: 313  VTK 305
            ++K
Sbjct: 1170 LSK 1172


>SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 601

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +3

Query: 360 ASSFLDPNHFSTFRRRGFTMRMSTAKC-LKFLLRTPRG 470
           A SFL+P   STF R  F+  +S   C +   LR+P G
Sbjct: 341 AQSFLEPQTRSTFLRYLFSDEVSVKVCHVLKELRSPTG 378


>SPAC19A8.03 |||phosphatidylinositol-3-phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 559

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 6/23 (26%), Positives = 15/23 (65%)
 Frame = +2

Query: 152 RVNDGHTRCHLYPSDVFLPQEVT 220
           ++N+ ++ CH YP  + +P  ++
Sbjct: 152 KINENYSECHSYPQALAVPASIS 174


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,113,247
Number of Sequences: 5004
Number of extensions: 65526
Number of successful extensions: 189
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)