Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P15_pT_A18
(779 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1805.02c |||electron transfer flavoprotein beta subunit |Sch... 173 2e-44
SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces p... 27 2.3
SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyce... 27 4.0
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 27 4.0
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom... 26 5.3
SPAC11E3.11c |||guanyl-nucleotide exchange factor |Schizosacchar... 26 7.0
SPBC25H2.09 |||DUF1690 family protein|Schizosaccharomyces pombe|... 26 7.0
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc... 25 9.2
SPAC57A10.11c |tim40||TIM22 inner membrane protein import comple... 25 9.2
SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|c... 25 9.2
SPAC13A11.06 ||SPAC3H8.01|pyruvate decarboxylase |Schizosaccharo... 25 9.2
>SPAC1805.02c |||electron transfer flavoprotein beta subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 254
Score = 173 bits (421), Expect = 2e-44
Identities = 93/223 (41%), Positives = 135/223 (60%), Gaps = 2/223 (0%)
Frame = -1
Query: 767 GVKHSMNPFDEIAVEEAVRMKXX--KLASEVIAVSCGPSQAQETLRTALAMGADRAIHVE 594
G K S+NPF +IAVEEA+RMK + + V+ G + ++ LR LA G RA +
Sbjct: 33 GQKMSINPFCDIAVEEAIRMKETLKNRIEDTLVVTAGQTSSEPILRQCLAKGIGRAALIN 92
Query: 593 VAGAEYDTLQPIHVAKILAKLSQDEKADLVIVGKQAIDDDSNQTAQMTAALLDWPQGTFA 414
V E L+P+ VAK+L + EK++LV++GKQAIDDD++QT M AA+L WPQ T A
Sbjct: 93 VGEKE---LEPLSVAKLLKATVEKEKSNLVLLGKQAIDDDAHQTGGMLAAMLGWPQFTSA 149
Query: 413 SKIEKTDGALTITREIDGGLEVIKTKIPAVLSADLRLNEPRYATLPNIMXXXXXXXXXXX 234
SK+ + +TREIDGG E + + +PA+++ DLRLN PR+A L +M
Sbjct: 150 SKVRIEGDKVIVTREIDGGEETLSSTLPAIITTDLRLNVPRFANLAKVMKARKAPLGKMS 209
Query: 233 XKDLGVDLAPRIKVVSVEDPPVRQAGSIIPDVDTLVAKLKEGG 105
+DLGV + R++ VSV +P ++ ++ VD +V LKE G
Sbjct: 210 PEDLGVTIDQRLQTVSVSEPVQKRQNIMVKSVDEMVKTLKELG 252
>SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 417
Score = 27.5 bits (58), Expect = 2.3
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = +1
Query: 76 IKSSIYDYTCPPSLSLATRVSTSGMMEPACRTGGSSTETTLIRGARSTP 222
+ S +Y YT + A+ +ST+G + A G + ETT A TP
Sbjct: 36 VTSKVYAYTTVTLEAAASAISTNGAAKEAATAAGDA-ETTSSVAASVTP 83
>SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 413
Score = 26.6 bits (56), Expect = 4.0
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = +1
Query: 361 PSISRVIVRAPSVFSIFDANVPCGQS 438
PS+S V RAP FS +ANVP G++
Sbjct: 285 PSMSYVY-RAPESFSSINANVPYGRN 309
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 26.6 bits (56), Expect = 4.0
Identities = 18/54 (33%), Positives = 27/54 (50%)
Frame = +1
Query: 475 SSSMACLPTITKSAFSSCDSFAKIFAT*MGCNVSYSAPATST*IARSAPIARAV 636
SSS + PTIT+S+ S+ S N SYS+P +S + S I ++
Sbjct: 781 SSSSSATPTITQSSISTSVSSQS------SMNSSYSSPISSNSVTSSTSIISSI 828
>SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1462
Score = 26.2 bits (55), Expect = 5.3
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Frame = +3
Query: 42 KNVPYDFSLLIN*KFDLRLHMSAFLKLSNE-SVDIRYDGASLSD--WRIFHRDHLDTRC 209
K +P+D S+L N +L + FLK + E VD D W+I + DH+ C
Sbjct: 1214 KGLPFDKSILDNHSAELNDAFNLFLKAAVEYKVDSNESSEHFQDTRWKIIY-DHVCKLC 1271
>SPAC11E3.11c |||guanyl-nucleotide exchange factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 942
Score = 25.8 bits (54), Expect = 7.0
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +1
Query: 346 ITSKPPSISRVIVRAPSVFSIFDANVPCGQSNKAAVI 456
ITS P+ S++ VR + S FD ++P G S A I
Sbjct: 143 ITSSTPTPSQLPVRPSTSLSFFD-DIPLGPSFSAETI 178
>SPBC25H2.09 |||DUF1690 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 162
Score = 25.8 bits (54), Expect = 7.0
Identities = 21/85 (24%), Positives = 36/85 (42%)
Frame = -1
Query: 659 SQAQETLRTALAMGADRAIHVEVAGAEYDTLQPIHVAKILAKLSQDEKADLVIVGKQAID 480
SQ + LR H++ + E DT + + + + K QDE L + K+AID
Sbjct: 6 SQPEFVLRAPTEFSEKFVRHLQES-TETDTSRYMDMENYIQKRVQDELKQLQLRQKKAID 64
Query: 479 DDSNQTAQMTAALLDWPQGTFASKI 405
+ + A + QG+ S +
Sbjct: 65 AIQEEEWKSNAKTIKDSQGSLDSNL 89
>SPAC6G9.04 |mug79||meiotically upregulated gene
Mug79|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1318
Score = 25.4 bits (53), Expect = 9.2
Identities = 22/85 (25%), Positives = 42/85 (49%)
Frame = +2
Query: 383 LEHHQSFLSLMQMFLVANLIKQQSSVLSGWSHHLWPVCQQ*LSLPSHLVTVLLRFLQHEW 562
L+ Q F+S + FL +N +S + ++H++ V + + S + T R E
Sbjct: 105 LKQIQEFISHRRSFLNSNANSVESEKILAENNHMFNVKSKLSNKESFIKTRRPR-TNGEL 163
Query: 563 AVMCHIQPQPLQHE*LDLHPSQEQF 637
+ + +QP+ + E ++ HPSQ F
Sbjct: 164 SDLS-LQPKRIFSEPVNSHPSQSMF 187
>SPAC57A10.11c |tim40||TIM22 inner membrane protein import complex
subunit Tim40|Schizosaccharomyces pombe|chr 1|||Manual
Length = 313
Score = 25.4 bits (53), Expect = 9.2
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Frame = +1
Query: 415 ANVPCGQSNKAAVICAVWLES--SSMACL 495
A+ PCG+ KAA C V+ +S M CL
Sbjct: 206 AHGPCGEEFKAAFSCFVYSKSEPKGMECL 234
>SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|chr
2|||Manual
Length = 807
Score = 25.4 bits (53), Expect = 9.2
Identities = 8/23 (34%), Positives = 16/23 (69%)
Frame = -3
Query: 99 VIVNRTFNLSIVKNHREHFYIKC 31
++++++F IVKNH + +KC
Sbjct: 461 LVISKSFGTLIVKNHNQLSLLKC 483
>SPAC13A11.06 ||SPAC3H8.01|pyruvate decarboxylase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 571
Score = 25.4 bits (53), Expect = 9.2
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +3
Query: 180 FHRDHLDTRCQVHPKVFGTYFFERLL 257
FH DH+ R ++P V Y +LL
Sbjct: 312 FHSDHMRIRYALYPNVAMKYILRKLL 337
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,098,455
Number of Sequences: 5004
Number of extensions: 62233
Number of successful extensions: 183
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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