Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_pT_A13
         (670 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2 |Sc...    27   2.4  
SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce...    26   5.6  
SPBC609.03 |||WD repeat protein, human IQWD1 family|Schizosaccha...    25   7.5  
SPAC31A2.15c |dcc1||DNA replication factor C complex subunit Dcc...    25   7.5  

>SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 611

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 17/64 (26%), Positives = 29/64 (45%)
 Frame = +3

Query: 117 NAFKRNEVFFFLSNNFIALKSLIIVPKAVSLILIDWATPTECLWPTSLRG*RHAVSDVTN 296
           N      +FF+L+ NF+ +K  +I  +   L   +    +  L   + +  R    DVT 
Sbjct: 242 NEHSIGSLFFYLNYNFVNVKRQVIYLELFELDTAESEKKSAALAKDNNQSFRFLELDVTE 301

Query: 297 KYLS 308
           K+LS
Sbjct: 302 KFLS 305


>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 960

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +2

Query: 167 RPEVAYHSSKSRLAHTNRLGH 229
           RP+  YH S+S L++  +LGH
Sbjct: 664 RPKKPYHKSQSYLSYLLQLGH 684


>SPBC609.03 |||WD repeat protein, human IQWD1
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +1

Query: 232 PPSVCGRLHCAANVTRLVTSLINIFQSNRQQQIIYKLL 345
           PPS C R H + +   + T+ +N  Q +R   I  ++L
Sbjct: 746 PPSGCSRNHTSNSYKIIATNEMNRQQGSRDSYITSRML 783


>SPAC31A2.15c |dcc1||DNA replication factor C complex subunit Dcc1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 349

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = +3

Query: 129 RNEVFFFLSNNFIALKSLIIVPKAVSLI--LIDW 224
           RNEV  FL  NF  +K+  +   + S I  +IDW
Sbjct: 140 RNEVDSFLQKNFFMVKNEFLYRLSPSYICSIIDW 173


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,263,358
Number of Sequences: 5004
Number of extensions: 39421
Number of successful extensions: 104
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)