Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_pT_A12
         (484 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|...    29   0.49 
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        26   2.6  
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    25   7.9  
SPAP27G11.15 |slx1||structure-specific endonuclease catalytic su...    25   7.9  

>SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 618

 Score = 28.7 bits (61), Expect = 0.49
 Identities = 16/59 (27%), Positives = 29/59 (49%)
 Frame = +3

Query: 198 SLTTTNSLYFYKFPVMTFTKSLKLQYSWHNQFIIRRIKLCSFIRTLTHFKILYNFIFHF 374
           +LTTT+ +  +KFP+ +  K    +  +   F +     C  + +L   K  +NF+F F
Sbjct: 143 NLTTTSEIPTFKFPIFSKRKYNDTENLYEQPFHL-EFDTCQELLSLFFLKQYHNFMFVF 200


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 14/56 (25%), Positives = 23/56 (41%)
 Frame = +3

Query: 201  LTTTNSLYFYKFPVMTFTKSLKLQYSWHNQFIIRRIKLCSFIRTLTHFKILYNFIF 368
            + + NS   YK         LKL   W N ++   +  C   R   + K+L  ++F
Sbjct: 2327 IASANSNIVYKLSYDVIRHFLKLVVLWKNIYVWTNVPDCDISRFYCYTKMLGEWMF 2382


>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 243

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 144 SRIKNNNHYTTGSFFSSLYA 85
           SR +NN+HY   SF  S Y+
Sbjct: 196 SRSQNNSHYNDKSFHRSRYS 215


>SPAP27G11.15 |slx1||structure-specific endonuclease catalytic
           subunit |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 271

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = +3

Query: 216 SLYFYKFPVMTFTKSLKLQYSWHNQFIIRRIKLCSFIRTLTHFKILY 356
           S   Y FP      +LK +++W N  I R  K C F R+     I+Y
Sbjct: 58  SCLVYGFP--NKVSALKFEWNWQNLGISRYTKDCDF-RSKKQKTIMY 101


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,812,056
Number of Sequences: 5004
Number of extensions: 35468
Number of successful extensions: 81
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 186042952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)