Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_pT_A12
         (484 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z74041-4|CAD56597.1|  394|Caenorhabditis elegans Hypothetical pr...    29   2.3  
Z74041-3|CAA98522.1|  368|Caenorhabditis elegans Hypothetical pr...    29   2.3  
Z68222-9|CAE46689.1|  631|Caenorhabditis elegans Hypothetical pr...    27   7.1  
Z68222-8|CAC70146.2|  613|Caenorhabditis elegans Hypothetical pr...    27   7.1  
Z68217-11|CAE46673.1|  631|Caenorhabditis elegans Hypothetical p...    27   7.1  
Z68217-10|CAC70099.2|  613|Caenorhabditis elegans Hypothetical p...    27   7.1  
Z68217-4|CAA92467.2|  499|Caenorhabditis elegans Hypothetical pr...    27   7.1  
AF273780-1|AAG15129.1|  509|Caenorhabditis elegans nuclear recep...    27   7.1  
U88167-9|AAK68288.1|  890|Caenorhabditis elegans Hypothetical pr...    27   9.4  

>Z74041-4|CAD56597.1|  394|Caenorhabditis elegans Hypothetical
           protein T03F7.7b protein.
          Length = 394

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 4/66 (6%)
 Frame = +3

Query: 156 KRCFFLFHVKNLRFSLTTTNSLYFYK----FPVMTFTKSLKLQYSWHNQFIIRRIKLCSF 323
           K CF  FH+  L + +T+ N   F +      +    K + L Y  H+ F+++     +F
Sbjct: 85  KDCFERFHISQLNYEVTSKNLHVFVQKMEGTDIKEILKVMPLSYVLHSYFMLQE----NF 140

Query: 324 IRTLTH 341
            R + H
Sbjct: 141 SRAMAH 146


>Z74041-3|CAA98522.1|  368|Caenorhabditis elegans Hypothetical
           protein T03F7.7a protein.
          Length = 368

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 4/66 (6%)
 Frame = +3

Query: 156 KRCFFLFHVKNLRFSLTTTNSLYFYK----FPVMTFTKSLKLQYSWHNQFIIRRIKLCSF 323
           K CF  FH+  L + +T+ N   F +      +    K + L Y  H+ F+++     +F
Sbjct: 85  KDCFERFHISQLNYEVTSKNLHVFVQKMEGTDIKEILKVMPLSYVLHSYFMLQE----NF 140

Query: 324 IRTLTH 341
            R + H
Sbjct: 141 SRAMAH 146


>Z68222-9|CAE46689.1|  631|Caenorhabditis elegans Hypothetical
           protein F58G6.5c protein.
          Length = 631

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 3/24 (12%)
 Frame = -1

Query: 295 INWLCHEYCSFK---DFVNVITGN 233
           +NWLCH Y +FK   D V ++ G+
Sbjct: 416 VNWLCHTYKTFKAGCDGVALVNGS 439


>Z68222-8|CAC70146.2|  613|Caenorhabditis elegans Hypothetical
           protein F58G6.5b protein.
          Length = 613

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 3/24 (12%)
 Frame = -1

Query: 295 INWLCHEYCSFK---DFVNVITGN 233
           +NWLCH Y +FK   D V ++ G+
Sbjct: 398 VNWLCHTYKTFKAGCDGVALVNGS 421


>Z68217-11|CAE46673.1|  631|Caenorhabditis elegans Hypothetical
           protein F58G6.5c protein.
          Length = 631

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 3/24 (12%)
 Frame = -1

Query: 295 INWLCHEYCSFK---DFVNVITGN 233
           +NWLCH Y +FK   D V ++ G+
Sbjct: 416 VNWLCHTYKTFKAGCDGVALVNGS 439


>Z68217-10|CAC70099.2|  613|Caenorhabditis elegans Hypothetical
           protein F58G6.5b protein.
          Length = 613

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 3/24 (12%)
 Frame = -1

Query: 295 INWLCHEYCSFK---DFVNVITGN 233
           +NWLCH Y +FK   D V ++ G+
Sbjct: 398 VNWLCHTYKTFKAGCDGVALVNGS 421


>Z68217-4|CAA92467.2|  499|Caenorhabditis elegans Hypothetical
           protein F58G6.5a protein.
          Length = 499

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 3/24 (12%)
 Frame = -1

Query: 295 INWLCHEYCSFK---DFVNVITGN 233
           +NWLCH Y +FK   D V ++ G+
Sbjct: 284 VNWLCHTYKTFKAGCDGVALVNGS 307


>AF273780-1|AAG15129.1|  509|Caenorhabditis elegans nuclear receptor
           NHR-34 protein.
          Length = 509

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 3/24 (12%)
 Frame = -1

Query: 295 INWLCHEYCSFK---DFVNVITGN 233
           +NWLCH Y +FK   D V ++ G+
Sbjct: 294 VNWLCHTYKTFKAGCDGVALVNGS 317


>U88167-9|AAK68288.1|  890|Caenorhabditis elegans Hypothetical
           protein D2092.1b protein.
          Length = 890

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 12/18 (66%), Positives = 12/18 (66%)
 Frame = +3

Query: 234 FPVMTFTKSLKLQYSWHN 287
           F   TFTKSLK QYS  N
Sbjct: 102 FDTFTFTKSLKPQYSLEN 119


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,675,416
Number of Sequences: 27780
Number of extensions: 188090
Number of successful extensions: 397
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 394
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 397
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 892829112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)