Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_pT_A09
         (372 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC14C4.08 |mug5||meiotically upregulated gene Mug5|Schizosacch...    29   0.31 
SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces ...    24   8.8  

>SPAC14C4.08 |mug5||meiotically upregulated gene
           Mug5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 179

 Score = 28.7 bits (61), Expect = 0.31
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +2

Query: 119 YI*DTALHLH*ILNTLSRLYNLNTYCKKYSKAKSLK 226
           Y+ DT  H   ILN   R+YN+     K  KA  L+
Sbjct: 143 YLADTLRHNQNILNLCERIYNIQKLLNKREKASVLR 178


>SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1213

 Score = 23.8 bits (49), Expect = 8.8
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +3

Query: 231  IIYX*RVPINIEFSNMFIHLLTRNN 305
            ++Y  ++P N E  N+ I  + RNN
Sbjct: 969  MVYRRKIPFNCELKNLSIIDIIRNN 993


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,276,178
Number of Sequences: 5004
Number of extensions: 22545
Number of successful extensions: 38
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 118158644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)