Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_pT_A09
         (372 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0134 - 14071190-14071435,14071800-14071988,14072114-140721...    27   4.7  
03_03_0057 - 14132854-14133012,14133724-14133837,14134306-14134413     26   8.2  
01_05_0451 - 22361617-22361811,22362728-22362842,22363443-223635...    26   8.2  

>12_02_0134 -
           14071190-14071435,14071800-14071988,14072114-14072194,
           14072261-14072404,14072528-14072761,14072836-14073981,
           14074863-14074922,14075178-14075420,14075509-14075607,
           14076196-14076367,14076597-14076735,14077514-14077624,
           14077695-14077797,14077885-14077962,14078054-14078122,
           14078203-14078275,14078891-14078975,14079473-14079536,
           14079963-14080073,14080139-14080213,14080306-14080398,
           14080982-14081056,14081172-14081261
          Length = 1259

 Score = 27.1 bits (57), Expect = 4.7
 Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +1

Query: 82  KYILKSYKTYKNIH-LRHSITLTLNIKH 162
           K+ILK  KT K+IH LR  I +   +KH
Sbjct: 35  KFILKHGKTDKDIHNLRQEIEILRKLKH 62


>03_03_0057 - 14132854-14133012,14133724-14133837,14134306-14134413
          Length = 126

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +3

Query: 186 ILIAKNIQKRKV*NGIIYX*RVPINIEFSNMFIHLLTRNNXN 311
           +L+ K +Q  K   GI+       + E  N+F+  +TRN+ N
Sbjct: 13  VLVEKLLQPNKSAGGILLPETTKQSFEDRNVFLFRITRNDGN 54


>01_05_0451 -
           22361617-22361811,22362728-22362842,22363443-22363513,
           22363600-22363754,22363843-22363933,22364049-22364104,
           22364910-22365027,22365087-22365200,22365289-22365504
          Length = 376

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
 Frame = -1

Query: 243 RXKLCHFKLFAFEYFLQ*VFKLYNRLRVF-NI*CKCNAV-S*MYIFIC 106
           + + C F      + LQ VF LY++L+V+  I CK  A    +++F+C
Sbjct: 84  KSRCCDFCGEPLRFVLQVVFHLYDKLQVYAPIQCKETAYHRTLFVFMC 131


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,671,824
Number of Sequences: 37544
Number of extensions: 98687
Number of successful extensions: 145
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 588739508
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)