Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P15_F_P22
(518 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024776-21|AAK68479.1| 65|Caenorhabditis elegans Ribosomal pr... 81 6e-16
Z81129-4|CAB03405.1| 330|Caenorhabditis elegans Hypothetical pr... 31 0.65
AF040645-9|AAB94972.2| 197|Caenorhabditis elegans Hypothetical ... 30 1.1
U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical p... 28 4.6
U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p... 28 4.6
AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p... 28 4.6
U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna b... 27 6.1
U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type ribon... 27 6.1
EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA... 27 6.1
EF523769-1|ABS18835.1| 327|Caenorhabditis elegans ELAV-type RNA... 27 6.1
EF523768-1|ABS18834.1| 378|Caenorhabditis elegans ELAV-type RNA... 27 6.1
EF523767-1|ABS18833.1| 193|Caenorhabditis elegans ELAV-type RNA... 27 6.1
EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA... 27 6.1
>AC024776-21|AAK68479.1| 65|Caenorhabditis elegans Ribosomal
protein, small subunitprotein 28 protein.
Length = 65
Score = 80.6 bits (190), Expect = 6e-16
Identities = 41/54 (75%), Positives = 46/54 (85%), Gaps = 1/54 (1%)
Frame = +3
Query: 87 MDKPNVLARVVKVLGRTGSQGQCTQVKVEFIG-ETSRQIIRNVKGPVRDGDILT 245
MDK LARV KV+GRTGSQGQCTQV+VEFI + +R IIRNVKGPVR+GDILT
Sbjct: 1 MDKLT-LARVTKVIGRTGSQGQCTQVRVEFINDQNNRSIIRNVKGPVREGDILT 53
>Z81129-4|CAB03405.1| 330|Caenorhabditis elegans Hypothetical
protein T23F1.6 protein.
Length = 330
Score = 30.7 bits (66), Expect = 0.65
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +2
Query: 26 ETRQLWCTCAYCIKLDITSQNG*TQRSCSCRES 124
ETRQ C CA ++ + Q Q SCSC+ S
Sbjct: 22 ETRQASCGCAQSVQPTCSCQQASQQYSCSCQPS 54
>AF040645-9|AAB94972.2| 197|Caenorhabditis elegans Hypothetical
protein F52C6.3 protein.
Length = 197
Score = 29.9 bits (64), Expect = 1.1
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = +1
Query: 187 PAVRSSET*KDPSVTETSSLFLNLNVKLGGCDRLLQHYCIRL 312
P S E +DP E+S + NLNVK+ + L H IR+
Sbjct: 64 PLRESEEVTEDPISVESSEVIGNLNVKVAETQQELHHEGIRI 105
>U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical
protein K07E12.1b protein.
Length = 12268
Score = 27.9 bits (59), Expect = 4.6
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = -3
Query: 159 EYTGPENQYGQALSRHEQERWVYP 88
E TGPE+Q LS++E+ WVYP
Sbjct: 8246 EPTGPEDQ---KLSKNEKGEWVYP 8266
Score = 27.9 bits (59), Expect = 4.6
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = -3
Query: 159 EYTGPENQYGQALSRHEQERWVYP 88
E TGPE+Q LS++E+ WVYP
Sbjct: 9290 EPTGPEDQ---KLSKNEKGEWVYP 9310
>U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical
protein K07E12.1a protein.
Length = 13100
Score = 27.9 bits (59), Expect = 4.6
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = -3
Query: 159 EYTGPENQYGQALSRHEQERWVYP 88
E TGPE+Q LS++E+ WVYP
Sbjct: 8291 EPTGPEDQ---KLSKNEKGEWVYP 8311
Score = 27.9 bits (59), Expect = 4.6
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = -3
Query: 159 EYTGPENQYGQALSRHEQERWVYP 88
E TGPE+Q LS++E+ WVYP
Sbjct: 9335 EPTGPEDQ---KLSKNEKGEWVYP 9355
>AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin
protein.
Length = 13100
Score = 27.9 bits (59), Expect = 4.6
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = -3
Query: 159 EYTGPENQYGQALSRHEQERWVYP 88
E TGPE+Q LS++E+ WVYP
Sbjct: 8291 EPTGPEDQ---KLSKNEKGEWVYP 8311
Score = 27.9 bits (59), Expect = 4.6
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = -3
Query: 159 EYTGPENQYGQALSRHEQERWVYP 88
E TGPE+Q LS++E+ WVYP
Sbjct: 9335 EPTGPEDQ---KLSKNEKGEWVYP 9355
>U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna
binding protein familyprotein 1, isoform a protein.
Length = 584
Score = 27.5 bits (58), Expect = 6.1
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = -2
Query: 91 SILACNIELNAISTRAPKLACFEKNYHR 8
S+ +CNI L ST+A K CF YHR
Sbjct: 80 SVFSCNI-LRDKSTQASKGCCFVTFYHR 106
>U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type
ribonucleoprotein protein.
Length = 584
Score = 27.5 bits (58), Expect = 6.1
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = -2
Query: 91 SILACNIELNAISTRAPKLACFEKNYHR 8
S+ +CNI L ST+A K CF YHR
Sbjct: 80 SVFSCNI-LRDKSTQASKGCCFVTFYHR 106
>EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA
binding protein variantE protein.
Length = 513
Score = 27.5 bits (58), Expect = 6.1
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = -2
Query: 91 SILACNIELNAISTRAPKLACFEKNYHR 8
S+ +CNI L ST+A K CF YHR
Sbjct: 80 SVFSCNI-LRDKSTQASKGCCFVTFYHR 106
>EF523769-1|ABS18835.1| 327|Caenorhabditis elegans ELAV-type RNA
binding protein variantD protein.
Length = 327
Score = 27.5 bits (58), Expect = 6.1
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = -2
Query: 91 SILACNIELNAISTRAPKLACFEKNYHR 8
S+ +CNI L ST+A K CF YHR
Sbjct: 80 SVFSCNI-LRDKSTQASKGCCFVTFYHR 106
>EF523768-1|ABS18834.1| 378|Caenorhabditis elegans ELAV-type RNA
binding protein variantC protein.
Length = 378
Score = 27.5 bits (58), Expect = 6.1
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = -2
Query: 91 SILACNIELNAISTRAPKLACFEKNYHR 8
S+ +CNI L ST+A K CF YHR
Sbjct: 80 SVFSCNI-LRDKSTQASKGCCFVTFYHR 106
>EF523767-1|ABS18833.1| 193|Caenorhabditis elegans ELAV-type RNA
binding protein variantB protein.
Length = 193
Score = 27.5 bits (58), Expect = 6.1
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = -2
Query: 91 SILACNIELNAISTRAPKLACFEKNYHR 8
S+ +CNI L ST+A K CF YHR
Sbjct: 80 SVFSCNI-LRDKSTQASKGCCFVTFYHR 106
>EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA
binding protein variantA protein.
Length = 584
Score = 27.5 bits (58), Expect = 6.1
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = -2
Query: 91 SILACNIELNAISTRAPKLACFEKNYHR 8
S+ +CNI L ST+A K CF YHR
Sbjct: 80 SVFSCNI-LRDKSTQASKGCCFVTFYHR 106
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,457,231
Number of Sequences: 27780
Number of extensions: 174838
Number of successful extensions: 431
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 410
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 430
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1007108110
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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