Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_P20
         (788 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    24   1.2  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    24   1.2  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     22   4.9  
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    21   8.5  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   8.5  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   8.5  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +2

Query: 89   GDLYDYFRAGSTFNH 133
            GD+YDYF A  + N+
Sbjct: 2534 GDVYDYFNANFSLNY 2548


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +1

Query: 202 TVLCCDLSNS*EQCRRVWNTKLLCR 276
           TV  CD      +C+R++N K  C+
Sbjct: 775 TVCTCDAKYLEIKCKRIYNEKQCCK 799


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
 Frame = -1

Query: 698 SPCPIECILELVDVYLRLIFKLQFH---SKVRYD 606
           +PC  +C+ + V +  R  F L+++   SK  YD
Sbjct: 42  NPCARKCVKDSVPMTCRYTFLLEWYHTLSKACYD 75


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +2

Query: 524 YVHDVGRTERV 556
           YVH +GRT RV
Sbjct: 493 YVHRIGRTGRV 503


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
            protein.
          Length = 1464

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -2

Query: 532  MNINFLRLDISSPICNLRYPNARSSSENCV 443
            M+I   R+  + P   LRYPN + ++EN V
Sbjct: 1426 MSIAPNRVSQARPSVQLRYPNGK-ANENFV 1454


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
            protein.
          Length = 1464

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -2

Query: 532  MNINFLRLDISSPICNLRYPNARSSSENCV 443
            M+I   R+  + P   LRYPN + ++EN V
Sbjct: 1426 MSIAPNRVSQARPSVQLRYPNGK-ANENFV 1454


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,158
Number of Sequences: 336
Number of extensions: 4209
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21376414
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)