Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_P20
         (788 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY753541-1|AAV28544.1| 3398|Anopheles gambiae SGS4 protein.            25   2.0  
AY187043-1|AAO39757.1|  171|Anopheles gambiae putative antennal ...    25   2.0  
AY805323-1|AAV66543.1|  459|Anopheles gambiae beta subunit-GABA-...    25   3.5  
AJ302660-1|CAC35525.1|  195|Anopheles gambiae hypothetical prote...    25   3.5  

>AY753541-1|AAV28544.1| 3398|Anopheles gambiae SGS4 protein.
          Length = 3398

 Score = 25.4 bits (53), Expect = 2.0
 Identities = 19/89 (21%), Positives = 37/89 (41%), Gaps = 1/89 (1%)
 Frame = +3

Query: 345  VRSDTTPTEWAVFKFEGARIVCSARGSDFTEFRTQFSDDERAFGYLRLQMGDEMSKRKKF 524
            VR D      + + +    +  S+ G+ F   +    D+E+ FG+             K 
Sbjct: 1211 VRLDQDELRTSSYNYHPRDVHLSSEGAMFYRVKVAPGDNEKRFGWYEQATNSSTGATTKK 1270

Query: 525  MFMTWVGPNVSVINRAKMSTDK-AIIKDI 608
             F    G +V+V  + K  +++ A +KD+
Sbjct: 1271 SFAA-DGTDVTVREKPKQESNRDADVKDL 1298


>AY187043-1|AAO39757.1|  171|Anopheles gambiae putative antennal
           carrier protein AP-1 protein.
          Length = 171

 Score = 25.4 bits (53), Expect = 2.0
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +2

Query: 83  RNGDLYDYFRAGSTFNHSG 139
           +NG++  +   G+T+NHSG
Sbjct: 121 KNGNIASFDNRGNTYNHSG 139


>AY805323-1|AAV66543.1|  459|Anopheles gambiae beta
           subunit-GABA-A-gated chloride channelprotein.
          Length = 459

 Score = 24.6 bits (51), Expect = 3.5
 Identities = 12/48 (25%), Positives = 25/48 (52%)
 Frame = -1

Query: 725 ISNASAVVRSPCPIECILELVDVYLRLIFKLQFHSKVRYDVLDDSFVG 582
           ++  S  VRS  P    ++ +D+YL + F   F + + Y  ++ ++ G
Sbjct: 265 MTTISTGVRSSLPRISYVKAIDIYLVMCFVFVFAALLEYAAVNYTYWG 312


>AJ302660-1|CAC35525.1|  195|Anopheles gambiae hypothetical protein
           protein.
          Length = 195

 Score = 24.6 bits (51), Expect = 3.5
 Identities = 13/52 (25%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = -2

Query: 532 MNINFLRLDIS-SPICNLRYPNARSSSENCVRNSVKSLPLAEHTIRAPSNLN 380
           +N+N +R  ++ + +  L     +++ E     +V  + + EHTIR P N++
Sbjct: 88  INVNRMRRAVTDADLAKLERKLRQAADEGSTNGTV--ITIGEHTIRLPHNIS 137


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 878,295
Number of Sequences: 2352
Number of extensions: 18640
Number of successful extensions: 34
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 82744797
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)