Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_P18
         (617 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual    27   1.6  
SPAC31A2.14 |||WD repeat protein, human WRDR48 family|Schizosacc...    27   2.2  
SPAC10F6.15 |||S. pombe specific UPF0300 family protein 1|Schizo...    27   2.2  
SPBC30B4.02c |||R3H and G-patch domain, unknown biological role|...    27   2.2  
SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual    27   2.2  
SPCC1020.05 |||phosphoprotein phosphatase |Schizosaccharomyces p...    25   6.6  
SPBC115.03 ||SPBC839.18c|gfo/idh/mocA family oxidoreductase |Sch...    25   6.6  
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces...    25   8.8  
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo...    25   8.8  

>SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 426

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -3

Query: 240 ISCPTNIFFHELTRSILWLHSSLVQHFQNPTS*SLINYC 124
           +SC  +IFFH +    L+L +  +   Q  T+ ++I YC
Sbjct: 135 VSCFASIFFHAIACYALYLLTKSIFSNQKMTAYTVIFYC 173


>SPAC31A2.14 |||WD repeat protein, human WRDR48
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 962

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +3

Query: 219 KCLWDRRCTEYRNKYDRLKAWEEICEVLD 305
           KCLWD    +   ++D+ + +E+I + LD
Sbjct: 431 KCLWDILACKQAGEFDKSEDFEKIVQSLD 459


>SPAC10F6.15 |||S. pombe specific UPF0300 family protein
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 432

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -3

Query: 246 LYISCPTNIFFHELTRSILWLHSSLVQHFQNPTS 145
           LY++   NIF  +L  S L L++S    F+NP S
Sbjct: 303 LYLNMKKNIFLGKLPESTLLLYNSDGAIFKNPPS 336


>SPBC30B4.02c |||R3H and G-patch domain, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = +3

Query: 237 RCTEYRNKYDRLKAWEEICEVLDPNFHRVNNKHKNKSVLLMSKKWTNIR 383
           R T  R K D     EE+C+++D        KH++K ++L   K TN++
Sbjct: 51  RITFIRAK-DNYNPAEELCQLIDEQNAHNEAKHQSKEIML--PKETNVK 96


>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1339

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -3

Query: 207  LTRSILWLHSSLVQHFQNPTS*SLINYCLVI 115
            LTR +L   SS V HF +P   SL N  L++
Sbjct: 1039 LTRGLLCTPSSFVSHFLDPHGISLYNQPLLL 1069


>SPCC1020.05 |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 509

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 12/37 (32%), Positives = 16/37 (43%)
 Frame = +3

Query: 465 AVFVYKTKSSQKVDSRLSDEDNATEDSIEWLNEVYVD 575
           A++V  TK            D  TED +EWL+    D
Sbjct: 342 AIYVLDTKGDTSNRRLCPGYDAITEDQLEWLSSKVAD 378


>SPBC115.03 ||SPBC839.18c|gfo/idh/mocA family oxidoreductase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 368

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 20/66 (30%), Positives = 28/66 (42%)
 Frame = +3

Query: 354 LMSKKWTNIRDAYVKSLRMGRNRVKPYIHAEALEFLDAVFVYKTKSSQKVDSRLSDEDNA 533
           L    WT   DA VK+L        P +     +F DAVF    K + +   + SD+  A
Sbjct: 290 LYGNLWTVPLDADVKALPEPTKITVPTVQGNYRDFYDAVFEEILKKANEFPIK-SDQVLA 348

Query: 534 TEDSIE 551
            E  +E
Sbjct: 349 VEKIME 354


>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1526

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +3

Query: 249  YRNKYDRLKAWEEICEVLDPNFHRVNNKHKN 341
            Y+ KY+ L+   E  + +D NF  ++ KH++
Sbjct: 1170 YKKKYEGLQLDLEGLKDVDTNFQELSKKHRD 1200


>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1183

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -3

Query: 606 SWVVVLXQHSHQRTLRSTILLNLQLRCPRLR 514
           ++  V+   +H+R++ + ILL L  R  RLR
Sbjct: 515 AYSAVIVDEAHERSVNTDILLGLLSRIVRLR 545


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,505,006
Number of Sequences: 5004
Number of extensions: 50693
Number of successful extensions: 163
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)