Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P15_F_P18
(617 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0281 + 15733505-15733647,15734366-15734443,15734835-157350... 28 5.2
05_03_0608 + 16153992-16154960,16158959-16159168,16159252-161595... 28 5.2
06_01_0895 + 6877386-6878475,6878577-6878838,6878932-6879017,687... 28 6.8
05_04_0174 - 18728199-18731411 28 6.8
03_02_0997 - 13094357-13094379,13094797-13095058 28 6.8
02_05_0716 - 31177877-31177943,31178028-31178104,31178396-311785... 28 6.8
12_01_0220 - 1657554-1657620,1657943-1658109,1658110-1658267,165... 27 9.0
11_01_0218 - 1704459-1704629,1704895-1705119,1705120-1705277,170... 27 9.0
09_04_0521 - 18297343-18297840 27 9.0
06_03_0981 + 26527005-26527260,26527457-26527770 27 9.0
02_01_0432 - 3144560-3144655,3144792-3144832,3145019-3145094,314... 27 9.0
>11_04_0281 +
15733505-15733647,15734366-15734443,15734835-15735077,
15735868-15736012,15736234-15736293,15736376-15736471,
15736651-15737067,15737824-15737964,15738043-15738213,
15738394-15738651,15738741-15738889,15739060-15739557,
15740147-15740420,15740631-15740696,15740891-15741057,
15741413-15741497,15741673-15741732
Length = 1016
Score = 28.3 bits (60), Expect = 5.2
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +3
Query: 138 VIRMSDSESVVPAKNEAIELIGLVRERKCLWD 233
VIR+S ++V +A E+ L+ + C+WD
Sbjct: 197 VIRISKKDTVGELHKKACEVFDLIPDEVCIWD 228
>05_03_0608 +
16153992-16154960,16158959-16159168,16159252-16159512,
16160153-16160197,16160324-16160410,16160679-16160774
Length = 555
Score = 28.3 bits (60), Expect = 5.2
Identities = 17/69 (24%), Positives = 35/69 (50%), Gaps = 8/69 (11%)
Frame = +3
Query: 231 DRRCTEYRNKYDRLKAWEEIC------EVLDPNFHRVN--NKHKNKSVLLMSKKWTNIRD 386
D +C R +Y+R+K W++ C +++ N +N ++ K + +L M K + +
Sbjct: 467 DAKCCALR-EYERIKVWQQYCFTKLFRSLVENNRSELNRLDREKKEDMLEMIKGYVTSQA 525
Query: 387 AYVKSLRMG 413
AY + + G
Sbjct: 526 AYAEKIVEG 534
>06_01_0895 +
6877386-6878475,6878577-6878838,6878932-6879017,
6879117-6879274,6879554-6879630,6879719-6879785
Length = 579
Score = 27.9 bits (59), Expect = 6.8
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = -2
Query: 262 YLFLYSVHLLSHKHFLSRTNPINSMASFFAGTTLSESDIL 143
++ L++V LLS HF+S NP F A TL + +L
Sbjct: 32 FVALFAVPLLSF-HFISTNNPYTMNLRFIAADTLQKLIVL 70
>05_04_0174 - 18728199-18731411
Length = 1070
Score = 27.9 bits (59), Expect = 6.8
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = -3
Query: 606 SWVVVLXQHSHQRTLRSTILLNLQLRCPRLRVDCLL 499
S+ VV+ +H+RTL + IL L RLR D L
Sbjct: 519 SYSVVVVDEAHERTLATDILFGLVKDIARLRPDMKL 554
>03_02_0997 - 13094357-13094379,13094797-13095058
Length = 94
Score = 27.9 bits (59), Expect = 6.8
Identities = 20/48 (41%), Positives = 23/48 (47%)
Frame = -3
Query: 393 RKRLVCSSIFLTSVEPTYSYACCLLCGS*GLAPHRSPPKPSACRICSY 250
R+R CS VEP AC L GS P SPP+ AC +C Y
Sbjct: 46 RRRRSCSG---ADVEP----ACAALAGSGRPRPVPSPPRRRAC-LCRY 85
>02_05_0716 -
31177877-31177943,31178028-31178104,31178396-31178553,
31178647-31178732,31178847-31180303
Length = 614
Score = 27.9 bits (59), Expect = 6.8
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = -2
Query: 262 YLFLYSVHLLSHKHFLSRTNPINSMASFFAGTTLSESDIL 143
++ L++V LLS HF+S NP F A TL + +L
Sbjct: 32 FVALFAVPLLSF-HFISTNNPYTMNLRFIAADTLQKLMVL 70
>12_01_0220 -
1657554-1657620,1657943-1658109,1658110-1658267,
1658362-1658447,1658559-1658808,1659194-1660320,
1662207-1662351,1663555-1663696,1663775-1663828,
1663914-1663985,1664710-1664778,1664885-1664926,
1665024-1665092,1665257-1665394,1665518-1665628,
1665704-1665836,1666834-1666889,1667191-1667901
Length = 1198
Score = 27.5 bits (58), Expect = 9.0
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = -2
Query: 262 YLFLYSVHLLSHKHFLSRTNPINSMASFFAGTTLSESDIL 143
++ L++V LLS HF+S NP F A TL + +L
Sbjct: 655 FVALFAVPLLSF-HFISTNNPFAMNLRFLAADTLQKLIVL 693
>11_01_0218 -
1704459-1704629,1704895-1705119,1705120-1705277,
1705378-1705463,1705574-1705823,1706220-1707246
Length = 638
Score = 27.5 bits (58), Expect = 9.0
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = -2
Query: 262 YLFLYSVHLLSHKHFLSRTNPINSMASFFAGTTLSESDIL 143
++ L++V LLS HF+S NP F A TL + +L
Sbjct: 45 FVALFAVPLLSF-HFISTNNPFAMNLRFLAADTLQKLIVL 83
>09_04_0521 - 18297343-18297840
Length = 165
Score = 27.5 bits (58), Expect = 9.0
Identities = 18/43 (41%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Frame = -3
Query: 387 RLVCSSIFLTSVEPT---YSYACCLLCGS*GLAPHRSPPKPSA 268
RL C IF + T Y +A C LC S LA SPP +A
Sbjct: 118 RLPCGHIFHRACLETWLDYDHATCPLCRSRLLADSSSPPAAAA 160
>06_03_0981 + 26527005-26527260,26527457-26527770
Length = 189
Score = 27.5 bits (58), Expect = 9.0
Identities = 24/67 (35%), Positives = 32/67 (47%)
Frame = -3
Query: 450 KPRRVCTASPGSSPSSVT*RKRLVCSSIFLTSVEPTYSYACCLLCGS*GLAPHRSPPKPS 271
+PRRV T + + + + R+R CS VE AC L GS P SPP+
Sbjct: 26 RPRRVTTVAIEAVAAWWS-RRRRSCSG---ADVE----LACAALAGSGRPRPVPSPPRQR 77
Query: 270 ACRICSY 250
AC +C Y
Sbjct: 78 AC-LCRY 83
>02_01_0432 -
3144560-3144655,3144792-3144832,3145019-3145094,
3145465-3145542,3146121-3146208,3146613-3146686,
3147445-3147579,3147699-3147770,3148239-3148325,
3148418-3148522,3149028-3149085,3149576-3149634,
3149960-3150056,3150217-3150317,3150443-3150487,
3150619-3150681,3151082-3151147,3151286-3151342,
3151570-3151656,3152063-3152239,3152413-3152625
Length = 624
Score = 27.5 bits (58), Expect = 9.0
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = -3
Query: 453 PKPRRVCTASPGSSPSSVT 397
P+ R VC A+P SSP+S T
Sbjct: 44 PRGRVVCPAAPASSPASTT 62
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,354,292
Number of Sequences: 37544
Number of extensions: 324167
Number of successful extensions: 908
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 892
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 908
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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